Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PYW43_RS00040 Genome accession   NZ_CP118949
Coordinates   9768..10319 (+) Length   183 a.a.
NCBI ID   WP_003142907.1    Uniprot ID   A0A7M1KS45
Organism   Aerococcus viridans strain DSM 20340     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4768..15319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW43_RS00030 gyrA 6581..9160 (+) 2580 WP_003142912.1 DNA gyrase subunit A -
  PYW43_RS00035 rpsF 9429..9731 (+) 303 WP_003142910.1 30S ribosomal protein S6 -
  PYW43_RS00040 ssb 9768..10319 (+) 552 WP_003142907.1 single-stranded DNA-binding protein Machinery gene
  PYW43_RS00045 rpsR 10346..10582 (+) 237 WP_003142905.1 30S ribosomal protein S18 -
  PYW43_RS00050 - 10644..11024 (-) 381 WP_003142903.1 VOC family protein -
  PYW43_RS00055 - 11182..12249 (-) 1068 WP_003142900.1 iron-containing alcohol dehydrogenase family protein -
  PYW43_RS00060 - 12327..13361 (-) 1035 WP_003142898.1 branched-chain amino acid aminotransferase -
  PYW43_RS00065 - 13764..14645 (-) 882 Protein_12 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20128.56 Da        Isoelectric Point: 4.4023

>NTDB_id=796639 PYW43_RS00040 WP_003142907.1 9768..10319(+) (ssb) [Aerococcus viridans strain DSM 20340]
MINNVVLVGRLTRDVDVRYTQSGVAVGSFSVAVERNFKNAQGERETDFINCVIWRKAAENFARFTRKGSLVGVEGSIQTR
NYENNQGQRVYVTEILVDNFSLLESKSVTESRPASDNNNNSGFGGFNNNNANNNSYNNQNADPFDGNSFNQNSSSFNNGN
DNPFPSSNDGSGSINVTDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=796639 PYW43_RS00040 WP_003142907.1 9768..10319(+) (ssb) [Aerococcus viridans strain DSM 20340]
ATGATTAATAATGTTGTACTGGTCGGCCGTTTAACTCGTGACGTTGATGTGCGTTATACGCAAAGTGGCGTTGCCGTTGG
ATCTTTCAGCGTTGCCGTTGAAAGAAACTTTAAAAATGCCCAAGGTGAACGTGAGACAGATTTTATTAACTGTGTTATTT
GGCGTAAAGCAGCAGAGAATTTTGCGCGTTTTACCCGTAAAGGTTCATTAGTAGGTGTTGAAGGCAGCATCCAAACTCGA
AACTACGAGAATAACCAAGGACAACGTGTATACGTTACTGAGATTTTGGTTGATAACTTTAGTTTATTAGAATCAAAATC
AGTTACTGAAAGCCGCCCTGCCTCTGATAATAATAATAACAGTGGTTTTGGTGGGTTTAATAACAATAACGCAAACAACA
ACAGCTATAACAATCAAAATGCTGATCCATTTGATGGAAACAGCTTTAATCAAAACTCCTCTTCATTTAACAATGGTAAC
GATAACCCATTCCCATCATCTAATGATGGTTCTGGTTCAATCAATGTTACCGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M1KS45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.47

100

0.585
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.366

100

0.514