Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   PX335_RS17350 Genome accession   NZ_CP118933
Coordinates   3609620..3610093 (-) Length   157 a.a.
NCBI ID   WP_017387042.1    Uniprot ID   A0A1C2TS07
Organism   Acinetobacter pittii strain ML4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3604620..3615093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX335_RS17335 (PX335_17330) pilX 3607259..3608068 (-) 810 WP_005078460.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  PX335_RS17340 (PX335_17335) pilW 3608065..3609066 (-) 1002 WP_017387040.1 PilW family protein Machinery gene
  PX335_RS17345 (PX335_17340) pilV 3609066..3609626 (-) 561 WP_079381023.1 type IV pilus modification protein PilV Machinery gene
  PX335_RS17350 (PX335_17345) fimU 3609620..3610093 (-) 474 WP_017387042.1 GspH/FimT family pseudopilin Machinery gene
  PX335_RS17355 (PX335_17350) ispH 3610263..3611213 (-) 951 WP_017387043.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PX335_RS17360 (PX335_17355) gmk 3611336..3611965 (+) 630 WP_002116973.1 guanylate kinase -
  PX335_RS17365 (PX335_17360) rpoZ 3612038..3612316 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  PX335_RS17370 (PX335_17365) - 3612355..3612510 (+) 156 Protein_3379 hypothetical protein -
  PX335_RS17375 (PX335_17370) spoT 3612526..3614631 (+) 2106 WP_002116807.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16946.61 Da        Isoelectric Point: 7.7942

>NTDB_id=796521 PX335_RS17350 WP_017387042.1 3609620..3610093(-) (fimU) [Acinetobacter pittii strain ML4]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSFELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=796521 PX335_RS17350 WP_017387042.1 3609620..3610093(-) (fimU) [Acinetobacter pittii strain ML4]
ATGAGGGGAATTATTCCGCAAGATGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTTATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGATTAGATGGAAACCAGCGAGATCTAATAAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAAGACGTTTCTATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTTTTGAACTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCATTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGGGTGATAACCAATATCACCCAAGATACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C2TS07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.898

100

0.879