Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   PX335_RS16630 Genome accession   NZ_CP118933
Coordinates   3475906..3476790 (-) Length   294 a.a.
NCBI ID   WP_017386969.1    Uniprot ID   A0A009HQQ5
Organism   Acinetobacter pittii strain ML4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3470906..3481790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX335_RS16615 (PX335_16610) miaB 3472790..3474241 (+) 1452 WP_017386966.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  PX335_RS16620 (PX335_16615) phoL 3474279..3475367 (+) 1089 WP_017386967.1 PhoH family protein -
  PX335_RS16625 (PX335_16620) ybeY 3475377..3475853 (+) 477 WP_017386968.1 rRNA maturation RNase YbeY -
  PX335_RS16630 (PX335_16625) tonB2 3475906..3476790 (-) 885 WP_017386969.1 TonB family protein Machinery gene
  PX335_RS16635 (PX335_16630) - 3477023..3477694 (+) 672 WP_017386970.1 hypothetical protein -
  PX335_RS16640 (PX335_16635) - 3477853..3478566 (+) 714 WP_014207724.1 DUF3108 domain-containing protein -
  PX335_RS16645 (PX335_16640) xpt 3478639..3479214 (+) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  PX335_RS16650 (PX335_16645) wrbA 3479266..3479868 (-) 603 WP_079381004.1 NAD(P)H:quinone oxidoreductase -
  PX335_RS16655 (PX335_16650) - 3480229..3481476 (+) 1248 WP_002119535.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33698.21 Da        Isoelectric Point: 7.6439

>NTDB_id=796512 PX335_RS16630 WP_017386969.1 3475906..3476790(-) (tonB2) [Acinetobacter pittii strain ML4]
MLNKRSLSIEPFHHWWQDRVFIAATILAILLHIFVLLIHFAMPSPSEQSTKEIAISIRPSNEPVHQADFLAQADQQGSGA
FREAHRTSSDTPNPRLNDASTGDTELESLQKIQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTIDGIQAKKDASAIYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=796512 PX335_RS16630 WP_017386969.1 3475906..3476790(-) (tonB2) [Acinetobacter pittii strain ML4]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATCATTGGTGGCAAGACCGAGTCTTTATTGCTGCAACAATATT
GGCAATCTTACTGCATATTTTTGTATTGCTCATTCACTTTGCCATGCCTAGCCCCTCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGGCCAAGCAATGAGCCAGTTCACCAAGCAGATTTTTTGGCACAAGCAGATCAGCAAGGCTCGGGCGCA
TTTCGTGAAGCTCATCGGACTTCTAGTGATACTCCAAATCCGAGGCTCAATGATGCTTCAACTGGAGATACTGAGTTAGA
AAGTTTGCAAAAGATTCAGCAGCAAAGAGAGCTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAGAAAC
AAGCGGATGCAAGTCAAAGAAAAAAAGAATTAGAACAACTACAAAGTCAATTTCAAGCAAAAGCTGCGATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGCCAACAAGATTTCAGCCGTCAGCAAAAAATCAAAACAATCGATGGAATTCAAGCGAA
GAAAGATGCTTCAGCTATTTATTTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGCTATTACCCTGAAGAAG
CCAAACAGCAACAGCTAAGAGGTGAAGTGCGTTTAATGGTTATTTTGAATGCTCAAGGCGGAATTCGTGCAATCCGACTG
CTTGAAAGCTCAGGGCATTCAATACTAGATGAAGCAGCTAAGTCTTCAGTACGTCGCGGCGCACCATTCGGGCATTTTGA
TGCGAATATGAAAGATATTTCAGAGTTGCGTATTGTACGTACTTGGCGTTTTGATCCAGCGGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HQQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

87.755

100

0.878