Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   PX335_RS01390 Genome accession   NZ_CP118933
Coordinates   289091..289417 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain ML4     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 284091..294417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX335_RS01365 (PX335_01365) hemC 284706..285623 (+) 918 WP_275058519.1 hydroxymethylbilane synthase -
  PX335_RS01370 (PX335_01370) hemD 285627..286394 (+) 768 WP_017385881.1 uroporphyrinogen-III synthase -
  PX335_RS01375 (PX335_01375) - 286403..287245 (+) 843 WP_017385882.1 hypothetical protein -
  PX335_RS01380 (PX335_01380) - 287255..288448 (+) 1194 WP_017385883.1 membrane protein -
  PX335_RS01385 (PX335_01385) - 288456..288896 (+) 441 WP_017385884.1 thioesterase family protein -
  PX335_RS01390 (PX335_01390) hns 289091..289417 (+) 327 WP_000801427.1 H-NS histone family protein Regulator
  PX335_RS01395 (PX335_01395) gspN 289752..290495 (+) 744 WP_002121195.1 type II secretion system protein N -
  PX335_RS01400 (PX335_01400) - 290495..291331 (+) 837 WP_005079413.1 type II secretion system protein N -
  PX335_RS01405 (PX335_01405) gspD 291373..293649 (+) 2277 WP_017385885.1 type II secretion system secretin GspD -
  PX335_RS01410 (PX335_01410) - 293690..294316 (+) 627 WP_017385886.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=796489 PX335_RS01390 WP_000801427.1 289091..289417(+) (hns) [Acinetobacter pittii strain ML4]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=796489 PX335_RS01390 WP_000801427.1 289091..289417(+) (hns) [Acinetobacter pittii strain ML4]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1