Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PX335_RS01225 Genome accession   NZ_CP118933
Coordinates   255399..256811 (-) Length   470 a.a.
NCBI ID   WP_017385867.1    Uniprot ID   A0A009I162
Organism   Acinetobacter pittii strain ML4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 250399..261811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX335_RS01210 (PX335_01210) lptG 251451..252521 (+) 1071 WP_002121203.1 LPS export ABC transporter permease LptG -
  PX335_RS01215 (PX335_01215) gpmI 252648..254195 (+) 1548 WP_017385866.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  PX335_RS01220 (PX335_01220) ctpA 254211..255395 (+) 1185 WP_014208171.1 S41 family peptidase -
  PX335_RS01225 (PX335_01225) pilR 255399..256811 (-) 1413 WP_017385867.1 sigma-54 dependent transcriptional regulator Regulator
  PX335_RS01230 (PX335_01230) pilS 256835..258403 (-) 1569 WP_017385868.1 PAS domain-containing sensor histidine kinase Regulator
  PX335_RS01235 (PX335_01235) gacA 258414..259049 (-) 636 WP_002121174.1 response regulator -
  PX335_RS01240 (PX335_01240) pbpG 259262..260308 (+) 1047 WP_005065720.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  PX335_RS01245 (PX335_01245) thrC 260413..261552 (-) 1140 WP_275058518.1 threonine synthase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52610.64 Da        Isoelectric Point: 6.3452

>NTDB_id=796486 PX335_RS01225 WP_017385867.1 255399..256811(-) (pilR) [Acinetobacter pittii strain ML4]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVQHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVQQGKFRQDLFFRIHVMDIMLPPLRDRGGDILL
LANHFIQKVCTEWGISSKQLTASAETYLLQQDFPGNVRELRNMIERAITLSDDESIDLTHLAPPLRGSSVSPQIVTKQLN
QTPTVQAHPKFPMEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGEEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=796486 PX335_RS01225 WP_017385867.1 255399..256811(-) (pilR) [Acinetobacter pittii strain ML4]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
GATGGGGATTAAGACACATCTTGCTTATCGGGTTGAACAGGCCAAACAGCTCTTTACTCAGTTTCATTACGATGCGTGCT
TGACCGATTTAAATCTACCTGACGGTAGTGGTTTAGAATTGGTCCAACATGTTTCTCAAACTTACCCACACACACCCATT
GCAGTCTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCGGGAGCTTTTGATTTTGTCAGCAAACC
GATTAACCAGATTCATTTAGATCAGCTATTAAAAAAAGCGCTCAATCAGCCAAAACCAGAGCATGAATTTGGTGAAACAA
CTCTAGAGAATGACTTATTAATTGGGCGTTCACCACCTATACAAAACTTACGGACAGCTATTAAAAAAATAGCCCGCTCC
CAAGCTCCTGTATTTGTTACAGGCGAATCTGGTACGGGTAAAGAAGTTGTTGCTAATCTAATTCACCGCTTAAGCAACCG
CAGTGAAGGACCATTTATTGCAATTAACTGTGGAGCAATCCCAACTGAGCTCATGGAAAGTGAACTTTTCGGGCATAAAA
AAGGCAGTTTTACTGGAGCAACCCAAGACAAACAAGGTCTTATTTTATCGGCACACGGCGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAGTATGCAAGTTAAATTGCTTCGGGCAGTACAAGAGAAAAAGATTCGCCCTGTAGGTTCAGA
TCAGGAAATTGATGTTGATTTTCGAGTAATCAGTGCGAGTCACCAAGACTTAGATTTATTAGTTCAACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTTATGGATATTATGCTGCCGCCACTGCGTGACCGTGGTGGAGATATTTTGCTA
TTGGCCAATCATTTTATTCAAAAGGTTTGTACGGAATGGGGCATTTCAAGCAAGCAATTAACGGCGAGCGCTGAAACTTA
CTTATTGCAGCAAGACTTCCCAGGTAATGTTCGTGAATTAAGAAATATGATTGAGCGAGCTATTACTTTAAGTGATGATG
AGTCCATTGATTTAACACACTTAGCACCTCCTCTTAGAGGGAGTAGCGTGAGCCCGCAAATCGTAACGAAACAACTAAAT
CAAACACCGACTGTTCAGGCACACCCAAAATTTCCAATGGAAGGTTTAGAACGCTACTTAGAAAATATCGAAAAAGATAT
TTTACTGAATGCGCTAAATATGACGCATTGGAATCGAACTTTGGCAGCTAAAAAGCTAGGAATGACATTCCGTTCTTTAC
GCTATCGACTCAAAAAATTTGGCTTAGATACCGAAATGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009I162

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

86.047

100

0.866
  pilR Pseudomonas aeruginosa PAK

51.096

97.021

0.496