Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   O6P42_RS16115 Genome accession   NZ_CP118930
Coordinates   3330903..3331910 (+) Length   335 a.a.
NCBI ID   WP_005379543.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain V208     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3325903..3336910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6P42_RS16095 (O6P42_16095) rplC 3326444..3327073 (-) 630 WP_005379555.1 50S ribosomal protein L3 -
  O6P42_RS16100 (O6P42_16100) rpsJ 3327088..3327399 (-) 312 WP_004410492.1 30S ribosomal protein S10 -
  O6P42_RS16105 (O6P42_16105) rpmE 3327856..3328077 (-) 222 WP_005379546.1 50S ribosomal protein L31 -
  O6P42_RS16110 (O6P42_16110) priA 3328374..3330578 (+) 2205 WP_275115086.1 primosomal protein N' -
  O6P42_RS16115 (O6P42_16115) cytR 3330903..3331910 (+) 1008 WP_005379543.1 DNA-binding transcriptional regulator CytR Regulator
  O6P42_RS16120 (O6P42_16120) ftsN 3332136..3332684 (+) 549 WP_017820300.1 cell division protein FtsN -
  O6P42_RS16125 (O6P42_16125) hslV 3332800..3333351 (+) 552 WP_005383176.1 ATP-dependent protease subunit HslV -
  O6P42_RS16130 (O6P42_16130) hslU 3333375..3334706 (+) 1332 WP_025768349.1 HslU--HslV peptidase ATPase subunit -
  O6P42_RS16135 (O6P42_16135) - 3335494..3336411 (+) 918 WP_005397953.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36892.42 Da        Isoelectric Point: 6.2447

>NTDB_id=796445 O6P42_RS16115 WP_005379543.1 3330903..3331910(+) (cytR) [Vibrio alginolyticus strain V208]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=796445 O6P42_RS16115 WP_005379543.1 3330903..3331910(+) (cytR) [Vibrio alginolyticus strain V208]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCCTTAATGAATCCAGAGAA
AGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGTAACT
TACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGT
ATTGAAGATGCAGCCATGGAACATGGCTATCTAGTCCTGCTGGGCGATAGCGGACAACAGAAGAAACGCGAAAGCTCTTT
CGTTAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTACCATTCGATGTCAGTAAGCCAG
AGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCAGAGCTCGAGCTTCCGACAGTACATATTGATAAC
CTGACCTCAGCATTTGAAGCGGTGAATTACCTGACCCAATTAGGTCATAAACGCATTGCTCAAATCTCTGGACCAGACAC
AGCAATATTGTGTCAGTTCCGCCAGCAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCATCAATAAAGATCCACAATATA
GTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTGCCAGAACCACCAACGGCT
ATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGGCTTACGAGTACCGCAAGATCT
CTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCACCATATCTCAACCTCGCTATG
AGATTGGTCGACAAGCGATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCGCGTCTGCTTGAA
ACTAATCTCGTCATTCGTGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

98.204

99.701

0.979
  cytR Vibrio cholerae C6706

89.521

99.701

0.893