Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   O6P42_RS10960 Genome accession   NZ_CP118930
Coordinates   2193803..2195224 (+) Length   473 a.a.
NCBI ID   WP_085569561.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain V208     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2188803..2200224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6P42_RS10940 (O6P42_10940) - 2189284..2190090 (-) 807 WP_115385892.1 adenosylcobinamide-GDP ribazoletransferase -
  O6P42_RS10945 (O6P42_10945) cobT 2190090..2191133 (-) 1044 WP_115385891.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  O6P42_RS10950 (O6P42_10950) - 2191382..2192071 (+) 690 WP_005377884.1 NAD(P)H-binding protein -
  O6P42_RS10955 (O6P42_10955) - 2192272..2193645 (+) 1374 WP_025766775.1 L-cystine transporter -
  O6P42_RS10960 (O6P42_10960) sbcB 2193803..2195224 (+) 1422 WP_085569561.1 exodeoxyribonuclease I Machinery gene
  O6P42_RS10965 (O6P42_10965) - 2195280..2195654 (+) 375 WP_005377887.1 CidA/LrgA family protein -
  O6P42_RS10970 (O6P42_10970) - 2195656..2196333 (+) 678 WP_005377888.1 LrgB family protein -
  O6P42_RS10975 (O6P42_10975) cdd 2196764..2197651 (+) 888 WP_017633940.1 cytidine deaminase -
  O6P42_RS10980 (O6P42_10980) purT 2197795..2198970 (+) 1176 WP_085569562.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  O6P42_RS10985 (O6P42_10985) - 2199043..2199693 (-) 651 WP_213972299.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54388.58 Da        Isoelectric Point: 4.8633

>NTDB_id=796435 O6P42_RS10960 WP_085569561.1 2193803..2195224(+) (sbcB) [Vibrio alginolyticus strain V208]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=796435 O6P42_RS10960 WP_085569561.1 2193803..2195224(+) (sbcB) [Vibrio alginolyticus strain V208]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGCCAGCCACCTGCTG
ATTATCTTCCGTCTCCTGAAGCTGCACTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAAACCAAATACTACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCACGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAGCATAGTAACGCGCACGATGCCATGGCAGATGTGGTTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCCGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAACTATCCGCAGAAGAGCTGCACGAAAGACTCTACACTAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCGGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCTAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCAGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACACAGCTTTACGACGGGTTCTTTTCTCCGGCTG
ATCGCGCAGCTATGGATATCATTCGAGAAACCGACCCGAATAATCTTGCTGCATTAGACATTGAATTTGATGACAAGCGT
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACACTAGACGAGCAAGAACAAAGACGCTGGGCACT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.493

100

0.795