Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   O6P42_RS09605 Genome accession   NZ_CP118930
Coordinates   1872068..1873594 (+) Length   508 a.a.
NCBI ID   WP_085569876.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain V208     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1867068..1878594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6P42_RS09580 (O6P42_09580) - 1867369..1867689 (+) 321 WP_017634929.1 STAS domain-containing protein -
  O6P42_RS09585 (O6P42_09585) - 1867716..1868582 (+) 867 WP_017820663.1 OmpA family protein -
  O6P42_RS09590 (O6P42_09590) - 1868579..1870681 (+) 2103 WP_054574139.1 SLBB domain-containing protein -
  O6P42_RS09595 (O6P42_09595) - 1870681..1871367 (+) 687 WP_238966531.1 AAA family ATPase -
  O6P42_RS09600 (O6P42_09600) - 1871379..1871759 (+) 381 WP_005377636.1 Hpt domain-containing protein -
  O6P42_RS09605 (O6P42_09605) luxO 1872068..1873594 (+) 1527 WP_085569876.1 sigma-54 dependent transcriptional regulator Regulator
  O6P42_RS09610 (O6P42_09610) - 1873569..1874639 (+) 1071 WP_213891671.1 glycosyltransferase family 4 protein -
  O6P42_RS09615 (O6P42_09615) - 1874784..1875968 (+) 1185 WP_086046751.1 glycosyltransferase -
  O6P42_RS09620 (O6P42_09620) - 1875980..1877152 (+) 1173 WP_104979163.1 glycosyltransferase -
  O6P42_RS09625 (O6P42_09625) - 1877145..1878575 (+) 1431 WP_017820656.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 56584.50 Da        Isoelectric Point: 5.9083

>NTDB_id=796434 O6P42_RS09605 WP_085569876.1 1872068..1873594(+) (luxO) [Vibrio alginolyticus strain V208]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKHFLTTYAKQDKKKFSTIDSEAQHIIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVSHLPAQLTKKSKVTKTTTPA
HVAQESANIAPITPPPVYTEEPSPSAVEPSITAAELPGTPSSAATSPYFNSDGTIRPMWQVEREAIQNAIAYCDGNVLNA
AVMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=796434 O6P42_RS09605 WP_085569876.1 1872068..1873594(+) (luxO) [Vibrio alginolyticus strain V208]
ATGAGACCAAGGGTATTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTATGTGAAAGACGAACCTTA
TGACATTTTTCATGTCGAGACAGGTCGCGAAGCGATTCAATTTATTGAAAGAAGCAAACCTCAGCTCATCATTCTCGATT
TGAAACTGCCCGACATGTCTGGCGAAGACGTGCTGGATTGGATCAACCAGAATGACATTCCTACGTCCGTTATTATTGCT
ACGGCACACGGCAGCGTCGACTTAGCCGTTAATCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAGCCCATAAACGC
TGATCGCCTAAAAACGTCAGTTGCATTGCACCTTAAACGCGCCAAATTGGAAGATTTGGTGGAAAATATTCAGTCCAAGT
TTGATCGCCACAACTATCACGGATTCATCGGTTCAAGCCTCCCGATGCAGGCGGTATACAAGACCATTGATGCTGTTGCG
CCAACTTCTGCCAGTGTGTTTATTGTGGGAGAAAGCGGCACAGGTAAAGAAGTTTGTGCTGAAGCTGTCCACCGCCAGAG
TGACCGTAAAGACAAGCCTTTTATTGCAATTAACTGTGGGGCTATTCCACGAGATTTGATGGAAAGTGAGATTTTTGGTC
ACGTTAAAGGGGCCTTTACTGGAGCAACAACAGATCGAAAAGGTGCGGCGACGCTGGCACATGGTGGCACGCTTTTTCTT
GATGAGCTGTGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTCCGCTTTCTACAAACGGGCACTTACACCCCTCTTGG
TGGCACTCGAGAAATGAAAGTGGATGTGAGAATCATTTGTGCCACTAACCGAGATCCATTAACAGAAGTAGAAGAAGGTC
GTTTTCGTGAAGACTTATACTACCGTGTGCACGTTATACCTATCGATATGCCCCCATTACGTGAACGAGGAAGTGACATC
GTCACGCTTGCCAAGCACTTCTTGACCACTTACGCCAAACAGGACAAAAAGAAATTCTCAACAATCGACAGTGAAGCTCA
ACATATCATCAAGCATTACGAATGGCCGGGTAATGTAAGGCAACTACAAAACATCATACGTAACATTGTGGTGCTTAATA
ACGACGAAAAAGTCACGGTGAGCCACCTACCCGCTCAACTCACTAAAAAGTCAAAAGTTACGAAAACAACGACACCTGCG
CATGTTGCTCAAGAGTCAGCAAACATTGCACCAATCACACCACCACCTGTTTATACTGAGGAACCTTCACCTTCTGCGGT
CGAACCGTCGATTACCGCAGCGGAGCTGCCTGGTACACCGTCCTCTGCTGCTACCTCACCGTACTTTAACTCTGATGGAA
CCATTCGCCCTATGTGGCAAGTAGAGCGTGAAGCAATTCAAAACGCAATTGCGTACTGTGATGGCAACGTCCTCAACGCC
GCTGTCATGCTGGAGTTAAGCCCATCTACGGTTTACCGAAAAAAACAAGCGTGGGAAGCGGATGAAATTAATCTCGAACA
ATCTTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(458-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.899

97.047

0.484