Detailed information NTG0796423

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: O6P42_RS02645
• Genome accession: NZ_CP118930
• Coordinates: 550905..551891 (+)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain V208
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 545905..556891

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O6P42_RS02610 (O6P42_02610)	ftsB	545915..546196 (+)	282	WP_005380907.1	cell division protein FtsB	-
O6P42_RS02615 (O6P42_02615)	ispD	546198..546905 (+)	708	WP_017633548.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
O6P42_RS02620 (O6P42_02620)	ispF	546920..547396 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
O6P42_RS02625 (O6P42_02625)	truD	547442..548485 (+)	1044	WP_017633547.1	tRNA pseudouridine(13) synthase TruD	-
O6P42_RS02630 (O6P42_02630)	surE	548485..549261 (+)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
O6P42_RS02635 (O6P42_02635)	-	549261..549887 (+)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
O6P42_RS02640 (O6P42_02640)	-	549901..550824 (+)	924	WP_017633546.1	peptidoglycan DD-metalloendopeptidase family protein	-
O6P42_RS02645 (O6P42_02645)	rpoS	550905..551891 (+)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
O6P42_RS02650 (O6P42_02650)	mutS	551974..554535 (-)	2562	WP_065274847.1	DNA mismatch repair protein MutS	-
O6P42_RS02655 (O6P42_02655)	pncC	554620..555102 (+)	483	WP_065274846.1	nicotinamide-nucleotide amidase	-
O6P42_RS02660 (O6P42_02660)	recA	555303..556346 (+)	1044	WP_005380874.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=796423 O6P42_RS02645 WP_005380887.1 550905..551891(+) (rpoS) [Vibrio alginolyticus strain V208]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=796423 O6P42_RS02645 WP_005380887.1 550905..551891(+) (rpoS) [Vibrio alginolyticus strain V208]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854