Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   O6P42_RS01555 Genome accession   NZ_CP118930
Coordinates   332161..333177 (+) Length   338 a.a.
NCBI ID   WP_115386336.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain V208     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 327161..338177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6P42_RS01540 (O6P42_01540) - 327592..328320 (-) 729 WP_054866559.1 redoxin family protein -
  O6P42_RS01545 (O6P42_01545) oxyR 328490..329401 (+) 912 WP_005381326.1 DNA-binding transcriptional regulator OxyR -
  O6P42_RS01550 (O6P42_01550) - 329455..332016 (-) 2562 WP_115386337.1 PBP1A family penicillin-binding protein -
  O6P42_RS01555 (O6P42_01555) pilM 332161..333177 (+) 1017 WP_115386336.1 type IV pilus assembly protein PilM Machinery gene
  O6P42_RS01560 (O6P42_01560) pilN 333161..333736 (+) 576 WP_115386335.1 PilN domain-containing protein Machinery gene
  O6P42_RS01565 (O6P42_01565) pilO 333729..334322 (+) 594 WP_042523672.1 type 4a pilus biogenesis protein PilO Machinery gene
  O6P42_RS01570 (O6P42_01570) pilP 334312..334827 (+) 516 WP_115386334.1 pilus assembly protein PilP Machinery gene
  O6P42_RS01575 (O6P42_01575) pilQ 334853..336598 (+) 1746 WP_053307551.1 type IV pilus secretin PilQ family protein Machinery gene
  O6P42_RS01580 (O6P42_01580) aroK 336786..337304 (+) 519 WP_005381319.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37626.03 Da        Isoelectric Point: 7.2090

>NTDB_id=796413 O6P42_RS01555 WP_115386336.1 332161..333177(+) (pilM) [Vibrio alginolyticus strain V208]
MDKLIVTGIDIGHNSLKAVVLKPTGNNYALLGYKEILLKEGIVAENNTINHQEIVKTLKQIKKELPFGAKKVAISVPDNS
VISKKLQIEQNLEESEVEFAVIQAFSHQSPFPVEELSLDFVRLRAEGGQSGSDSYQVFATRKDVVEGRVDALQKSGLKPV
LVDVHSQSLGHIWKLTADRFPDKNKYCLLDIGTLSSSFTMFTEQGELFHKEFAYGTRGVNCASPVDFLSDDAQEKTELFN
RQIVERVKRQMQLYTSINGSQNIKGIWLSGEGASTPMLAEELSQQLSLECELLNPLGLFEMKVSKRKRRAVDWQHFSTAA
GLAVRGIHWLGGARALSH

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=796413 O6P42_RS01555 WP_115386336.1 332161..333177(+) (pilM) [Vibrio alginolyticus strain V208]
ATGGATAAGCTAATCGTTACCGGCATCGATATAGGCCATAACAGCCTCAAAGCCGTAGTACTTAAACCCACAGGCAACAA
TTACGCTCTGTTGGGTTACAAAGAAATATTACTAAAGGAAGGTATTGTCGCTGAAAATAACACCATAAATCATCAAGAAA
TTGTAAAGACCCTCAAGCAGATAAAAAAAGAACTGCCTTTTGGCGCTAAAAAAGTTGCGATCTCAGTTCCTGATAACTCG
GTAATTAGCAAGAAACTGCAAATAGAACAAAATCTTGAAGAGAGTGAAGTTGAGTTTGCAGTGATACAAGCCTTTTCTCA
TCAATCGCCATTCCCTGTCGAAGAGCTGAGTTTAGACTTCGTTCGTCTTCGCGCTGAGGGCGGGCAGAGTGGCAGTGATA
GCTATCAAGTGTTTGCGACAAGAAAAGATGTGGTGGAAGGCCGAGTCGATGCATTACAAAAGTCCGGACTAAAACCTGTT
TTAGTGGACGTGCATTCGCAAAGCCTTGGTCATATCTGGAAGCTCACCGCCGATCGCTTTCCTGACAAAAACAAATACTG
CTTACTCGATATTGGCACCTTATCGAGCTCCTTCACCATGTTTACCGAACAAGGTGAACTGTTTCACAAAGAGTTTGCTT
ACGGCACACGCGGAGTAAACTGCGCTTCTCCAGTCGATTTTCTGTCCGATGATGCTCAGGAGAAAACAGAGCTGTTTAAC
CGTCAAATCGTAGAGCGAGTAAAGCGCCAGATGCAGCTCTATACCTCAATCAATGGCTCACAAAACATCAAGGGTATCTG
GTTATCAGGGGAAGGGGCCTCCACTCCCATGCTCGCAGAGGAGTTGTCTCAACAATTGTCGTTAGAGTGTGAATTGCTAA
ATCCGCTAGGGCTATTTGAGATGAAGGTGTCTAAGCGTAAGCGTCGTGCTGTGGATTGGCAGCATTTCTCAACAGCAGCC
GGACTGGCCGTTCGTGGCATTCATTGGCTAGGAGGCGCCCGTGCTTTATCGCATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

82.84

100

0.828
  pilM Vibrio cholerae strain A1552

50.448

99.112

0.5