Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   RAM29_RS05940 Genome accession   NZ_CP132367
Coordinates   1205994..1206668 (-) Length   224 a.a.
NCBI ID   WP_001166500.1    Uniprot ID   Q99VW2
Organism   Staphylococcus aureus strain UNC_SA48     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1200994..1211668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM29_RS05925 (RAM29_05925) vraG 1202177..1204066 (-) 1890 WP_000143607.1 ABC transporter permease VraG -
  RAM29_RS05930 (RAM29_05930) vraF 1204056..1204817 (-) 762 WP_000985996.1 ABC transporter ATP-binding protein VraF -
  RAM29_RS05935 (RAM29_05935) graS 1204961..1206001 (-) 1041 WP_001061264.1 histidine kinase GraS/ApsS -
  RAM29_RS05940 (RAM29_05940) braR 1205994..1206668 (-) 675 WP_001166500.1 response regulator transcription factor GraR/ApsR Regulator
  RAM29_RS05945 (RAM29_05945) graX 1206684..1207607 (-) 924 WP_000802953.1 auxiliary protein GraX/ApsX -
  RAM29_RS05950 (RAM29_05950) - 1207720..1208226 (+) 507 WP_000940129.1 GNAT family N-acetyltransferase -
  RAM29_RS05955 (RAM29_05955) - 1208435..1208863 (-) 429 WP_000198504.1 hypothetical protein -
  RAM29_RS05960 (RAM29_05960) - 1209192..1210235 (-) 1044 WP_001030772.1 alpha/beta hydrolase -
  RAM29_RS05965 (RAM29_05965) - 1210386..1211453 (-) 1068 WP_000980137.1 membrane protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 26065.87 Da        Isoelectric Point: 4.3563

>NTDB_id=796385 RAM29_RS05940 WP_001166500.1 1205994..1206668(-) (braR) [Staphylococcus aureus strain UNC_SA48]
MQILLVEDDNTLFQELKKELEQWDFNVAGIEDFGKVMDTFESFNPEIVILDVQLPKYDGFYWCRKMREVSNVPILFLSSR
DNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTAEEKRTLTWQDAVVDLSKDSIQKGDDTIFLSKTEMIIL
EILITKKNQIVSRDTIITALWDDEAFVSDNTLTVNVNRLRKKLSEISMDSAIETKVGKGYMAHE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=796385 RAM29_RS05940 WP_001166500.1 1205994..1206668(-) (braR) [Staphylococcus aureus strain UNC_SA48]
ATGCAAATACTACTAGTAGAAGATGACAATACTTTGTTTCAAGAATTGAAAAAAGAATTAGAACAATGGGATTTTAATGT
TGCTGGTATTGAAGATTTCGGCAAAGTAATGGATACATTTGAAAGTTTTAATCCTGAAATTGTTATATTGGATGTTCAAT
TACCTAAATATGATGGGTTTTATTGGTGCAGAAAAATGAGAGAAGTTTCCAACGTACCAATATTATTTTTATCATCTCGT
GATAATCCAATGGATCAAGTGATGAGTATGGAACTTGGCGCAGATGATTATATGCAAAAACCTTTCTATACCAATGTATT
AATTGCTAAATTACAAGCGATTTATCGTCGTGTCTATGAGTTTACAGCTGAAGAAAAACGTACATTGACTTGGCAAGATG
CTGTCGTTGATCTATCAAAAGATAGTATACAAAAAGGTGACGATACGATTTTTCTATCCAAAACAGAAATGATTATATTA
GAAATTCTTATTACCAAAAAAAATCAAATCGTTTCGAGAGATACAATTATCACTGCATTATGGGATGATGAAGCATTTGT
TAGTGATAATACGTTAACAGTAAATGTGAATCGTTTACGAAAAAAATTATCTGAAATTAGTATGGATAGTGCAATCGAAA
CAAAAGTAGGAAAAGGATATATGGCTCATGAATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(149-221)

Response regulator receiver domain (Response_reg)

(3-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q99VW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.455

98.214

0.397