Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PY770_RS02335 Genome accession   NZ_CP118925
Coordinates   462523..463905 (+) Length   460 a.a.
NCBI ID   WP_014081755.1    Uniprot ID   A0A5C4TJ55
Organism   Fructilactobacillus sanfranciscensis strain SPC-SNU-70-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 457523..468905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY770_RS02310 (PY770_02310) - 457821..458492 (+) 672 WP_056958139.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  PY770_RS02315 (PY770_02315) - 458590..459642 (+) 1053 WP_163600933.1 WxL protein host-binding domain-containing protein -
  PY770_RS02320 (PY770_02320) - 459751..461085 (-) 1335 WP_163600934.1 C1 family peptidase -
  PY770_RS02325 (PY770_02325) rpiA 461140..461826 (-) 687 WP_139554935.1 ribose-5-phosphate isomerase RpiA -
  PY770_RS02330 (PY770_02330) - 461974..462510 (+) 537 WP_103429176.1 dUTP diphosphatase -
  PY770_RS02335 (PY770_02335) radA 462523..463905 (+) 1383 WP_014081755.1 DNA repair protein RadA Machinery gene
  PY770_RS02340 (PY770_02340) gltX 463979..465469 (+) 1491 WP_056958128.1 glutamate--tRNA ligase -
  PY770_RS02345 (PY770_02345) cysS 465576..466994 (+) 1419 WP_163600935.1 cysteine--tRNA ligase -
  PY770_RS02350 (PY770_02350) - 466994..467419 (+) 426 WP_056958124.1 Mini-ribonuclease 3 -
  PY770_RS02355 (PY770_02355) rlmB 467409..468161 (+) 753 WP_163600936.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  PY770_RS02360 (PY770_02360) - 468164..468703 (+) 540 WP_041817633.1 NYN domain-containing protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50031.36 Da        Isoelectric Point: 6.5927

>NTDB_id=796373 PY770_RS02335 WP_014081755.1 462523..463905(+) (radA) [Fructilactobacillus sanfranciscensis strain SPC-SNU-70-4]
MAKASTRFVCSNCGYVSPTYLGRCPNCGEWNTFEEETVTKNDTKTANVTRVSFEGKKSRPTLIDDVDAHDAPRYKIESNE
LNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLSHYGKRVLYVTGEESADQVKMRSDRLGVKHLDNLYVFPETDMTA
IREAIANVKPDVVIIDSVQTMQEGDVASAVGSVSQVRGVTADLMNIAKTNNITIFVVGHVTKGGAIAGPKTLEHMVDTVL
YFEGDKHHAYRLLRAVKNRFGSTNELGIFEMVDTGLKEVANPSEIFLEERLHNATGSAIVVAMEGTRPILVEIQALITPS
VFGNAQRTATGVDRNRVSLIMAVLEKRAGLMLQNQDAYLKAAGGVKLVEPAIDLAMAISIASSYEDISTDPKECYIGELG
LTGEIRRVDRIEQRIREATKLGFSRVIVPKHNLDGLKMDFDIDVVGVTTIREALKVALKK

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=796373 PY770_RS02335 WP_014081755.1 462523..463905(+) (radA) [Fructilactobacillus sanfranciscensis strain SPC-SNU-70-4]
ATGGCAAAGGCATCGACACGATTTGTTTGTTCTAATTGTGGTTATGTTTCACCCACTTATTTGGGACGTTGTCCTAACTG
TGGTGAGTGGAATACGTTTGAAGAAGAAACGGTTACCAAAAACGATACGAAAACAGCCAATGTAACCAGAGTTTCATTTG
AAGGGAAGAAATCAAGACCAACTTTAATTGATGATGTTGACGCTCACGATGCACCCCGTTATAAAATCGAATCGAACGAA
TTAAATCGTGTATTGGGTGGTGGAGTAGTTCCAGGGTCTTTAGTTTTAATTGGTGGTGACCCAGGAATTGGAAAGTCAAC
GTTGTTATTACAAGTTTCTGGACAATTAAGTCATTATGGTAAACGAGTTTTGTACGTTACTGGAGAAGAAAGTGCGGATC
AAGTTAAGATGCGTTCGGATCGACTTGGTGTTAAGCATCTTGATAATTTATATGTTTTCCCAGAAACTGATATGACGGCT
ATTCGGGAAGCAATTGCAAATGTCAAACCAGATGTTGTCATTATTGATTCAGTGCAAACGATGCAAGAAGGCGACGTGGC
ATCAGCAGTTGGTTCTGTTTCACAAGTCCGTGGCGTGACGGCTGATTTAATGAACATTGCGAAGACTAACAATATTACCA
TTTTTGTCGTGGGACATGTGACTAAAGGTGGAGCGATTGCTGGACCAAAGACTTTAGAGCATATGGTTGATACCGTTTTG
TATTTTGAAGGTGACAAGCATCATGCTTATCGTTTGTTGCGAGCCGTTAAAAATCGATTTGGTTCAACTAATGAATTAGG
AATTTTTGAAATGGTTGATACAGGACTAAAAGAAGTTGCTAATCCATCTGAAATCTTTTTAGAAGAACGGTTGCATAACG
CTACCGGTTCCGCGATTGTAGTTGCGATGGAAGGGACTCGTCCCATTTTAGTTGAAATCCAAGCTTTAATCACGCCCTCA
GTCTTTGGGAATGCCCAACGAACTGCGACAGGAGTTGACCGAAATCGGGTTTCTTTGATTATGGCCGTTTTGGAAAAACG
AGCAGGCTTGATGTTACAAAACCAGGATGCATATTTAAAAGCTGCTGGAGGCGTTAAGCTAGTTGAACCTGCAATTGATT
TAGCAATGGCAATCAGTATTGCTTCTAGTTATGAAGACATTAGTACTGATCCAAAAGAATGTTATATTGGTGAATTAGGT
TTGACTGGTGAAATTCGTCGGGTTGATCGAATTGAGCAACGAATTCGTGAAGCTACTAAATTAGGTTTTTCCCGTGTGAT
TGTGCCCAAACATAATTTAGATGGATTAAAAATGGATTTTGATATTGATGTGGTTGGAGTTACTACCATCCGCGAAGCTT
TGAAAGTTGCTTTAAAGAAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-224)

Subunit ChlI of Mg-chelatase (ChlI)

(370-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C4TJ55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

65.132

99.13

0.646
  radA Streptococcus pneumoniae D39

65.132

99.13

0.646
  radA Streptococcus pneumoniae R6

65.132

99.13

0.646
  radA Streptococcus pneumoniae TIGR4

65.132

99.13

0.646
  radA Streptococcus mitis SK321

65.132

99.13

0.646
  radA Streptococcus mitis NCTC 12261

65.132

99.13

0.646
  radA Bacillus subtilis subsp. subtilis str. 168

61.135

99.565

0.609