Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OO841_RS18165 Genome accession   NZ_AP026087
Coordinates   3546474..3546989 (-) Length   171 a.a.
NCBI ID   WP_001130215.1    Uniprot ID   B5Z2A2
Organism   Escherichia coli strain 8_140198     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3541474..3551989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO841_RS18140 (CL8NIID8_34800) ygaZ 3541873..3542610 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  OO841_RS18145 (CL8NIID8_34810) ygaH 3542600..3542935 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  OO841_RS18150 (CL8NIID8_34820) emrR 3543026..3543556 (+) 531 WP_000378437.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  OO841_RS18155 (CL8NIID8_34830) emrA 3543683..3544855 (+) 1173 WP_001302673.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  OO841_RS18160 (CL8NIID8_34840) emrB 3544872..3546410 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  OO841_RS18165 (CL8NIID8_34850) luxS 3546474..3546989 (-) 516 WP_001130215.1 S-ribosylhomocysteine lyase Regulator
  OO841_RS18170 (CL8NIID8_34860) gshA 3547139..3548695 (-) 1557 WP_000611787.1 glutamate--cysteine ligase -
  OO841_RS18175 (CL8NIID8_34870) yqaA 3548768..3549196 (-) 429 WP_001287450.1 YqaA family protein -
  OO841_RS18180 (CL8NIID8_34880) yqaB 3549193..3549759 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  OO841_RS18210 (CL8NIID8_34890) csrA 3550987..3551172 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19444.24 Da        Isoelectric Point: 5.0362

>NTDB_id=79632 OO841_RS18165 WP_001130215.1 3546474..3546989(-) (luxS) [Escherichia coli strain 8_140198]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=79632 OO841_RS18165 WP_001130215.1 3546474..3546989(-) (luxS) [Escherichia coli strain 8_140198]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGTCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725

Multiple sequence alignment