Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   RAM34_RS07550 Genome accession   NZ_CP132365
Coordinates   1495840..1496553 (+) Length   237 a.a.
NCBI ID   WP_001031454.1    Uniprot ID   A0A0H2XG68
Organism   Staphylococcus aureus strain UNC_SA54     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1490840..1501553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM34_RS07485 (RAM34_07475) ssb 1491212..1491640 (-) 429 WP_000934783.1 single-stranded DNA-binding protein -
  RAM34_RS07490 (RAM34_07480) - 1491640..1492278 (-) 639 WP_001043071.1 ERF family protein -
  RAM34_RS07495 (RAM34_07485) - 1492278..1492757 (-) 480 WP_000002516.1 siphovirus Gp157 family protein -
  RAM34_RS07500 (RAM34_07490) - 1492772..1493032 (-) 261 WP_031807830.1 DUF1108 family protein -
  RAM34_RS07505 (RAM34_07495) - 1493124..1493285 (-) 162 WP_000066020.1 DUF1270 domain-containing protein -
  RAM34_RS07510 (RAM34_07500) - 1493282..1493602 (-) 321 WP_001120935.1 DUF771 domain-containing protein -
  RAM34_RS07515 (RAM34_07505) - 1493751..1493850 (-) 100 Protein_1444 hypothetical protein -
  RAM34_RS07520 (RAM34_07510) - 1493881..1494075 (-) 195 WP_000388066.1 hypothetical protein -
  RAM34_RS07525 (RAM34_07515) - 1494092..1494844 (-) 753 WP_031807832.1 phage antirepressor KilAC domain-containing protein -
  RAM34_RS07530 (RAM34_07520) - 1494895..1495224 (+) 330 WP_000180411.1 hypothetical protein -
  RAM34_RS07535 (RAM34_07525) - 1495213..1495428 (-) 216 WP_001025404.1 MW1434 family type I TA system toxin -
  RAM34_RS07540 (RAM34_07530) - 1495444..1495707 (-) 264 WP_000854072.1 helix-turn-helix transcriptional regulator -
  RAM34_RS07545 (RAM34_07535) - 1495704..1495877 (-) 174 WP_001801500.1 hypothetical protein -
  RAM34_RS07550 (RAM34_07540) irvR 1495840..1496553 (+) 714 WP_001031454.1 XRE family transcriptional regulator Regulator
  RAM34_RS07555 (RAM34_07545) - 1496569..1497501 (+) 933 WP_058144558.1 exonuclease domain-containing protein -
  RAM34_RS07560 (RAM34_07550) - 1497507..1497848 (+) 342 WP_000591749.1 hypothetical protein -
  RAM34_RS07565 (RAM34_07555) - 1498052..1498234 (+) 183 WP_000705248.1 hypothetical protein -
  RAM34_RS07570 (RAM34_07560) - 1498334..1498798 (+) 465 WP_000825947.1 hypothetical protein -
  RAM34_RS07575 (RAM34_07565) - 1498857..1499894 (+) 1038 WP_000857185.1 site-specific integrase -
  RAM34_RS07580 (RAM34_07570) sph 1499951..1500775 (+) 825 Protein_1457 sphingomyelin phosphodiesterase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27017.58 Da        Isoelectric Point: 5.0545

>NTDB_id=796307 RAM34_RS07550 WP_001031454.1 1495840..1496553(+) (irvR) [Staphylococcus aureus strain UNC_SA54]
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSI
YNKLTPPRQENVLNYANEQLEEQNSKGDNVVDINSYKQEKTPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKV
NGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKDYDDLHFYRNESVRLIGKVIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=796307 RAM34_RS07550 WP_001031454.1 1495840..1496553(+) (irvR) [Staphylococcus aureus strain UNC_SA54]
ATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACT
TGCTGAACTCATTAACATAAAACCATCTACTTTAAGCGATTATTTAAATTTACGTTCCAACCCCTCTCACGGCGTTATAC
AAAGGATAGCTGATGTTTTCGAGGTTGGTAAAAGCGACATAGATACTACATACAAAGACGATAACGACATCACTTCCATA
TACAACAAACTCACACCTCCCCGCCAAGAAAACGTACTTAACTATGCAAATGAACAATTGGAAGAACAGAATTCTAAAGG
AGATAACGTTGTAGATATTAATTCATATAAACAGGAGAAAACTCCAGTTAACGTCAATGGTTGCGTCTCTGCTGGTGTAG
GAGAACGTTTACACGATGAAACGCTATTTACTGAAATGGTTAAAGGACCTATCCCCACACACGATTTAGCGTTAAAAGTA
AATGGTGATTCTATGGAACCTATGTTTAAAGATGGCGAAATCATATTTGTGGAGAAAACTCACAATATAAAGAATGGACA
AATTGGTATATTCATCATTGAAGAAGAAGCGTACGTTAAGAAAGTCTTTGTTGAAGATGATAGATTGACTCTAGTTTCAC
TAAATAAAGATTACGACGATCTACACTTTTATAGAAATGAAAGTGTGAGGTTAATTGGAAAAGTTATTTTATAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(127-236)

Helix-turn-helix (HTH_3)

(13-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XG68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

33.929

100

0.401