Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PXG99_RS16165 Genome accession   NZ_CP118911
Coordinates   3228853..3229143 (-) Length   96 a.a.
NCBI ID   WP_202622640.1    Uniprot ID   -
Organism   Bacillus velezensis strain XRD006     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3223853..3234143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXG99_RS16125 (PXG99_16125) darA 3223871..3224200 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  PXG99_RS16130 (PXG99_16130) - 3224213..3224653 (+) 441 WP_029974647.1 DUF327 family protein -
  PXG99_RS16135 (PXG99_16135) holB 3224665..3225654 (+) 990 WP_029974650.1 DNA polymerase III subunit delta' -
  PXG99_RS16140 (PXG99_16140) ricT 3225657..3226484 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  PXG99_RS16145 (PXG99_16145) yabA 3226499..3226858 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  PXG99_RS16150 (PXG99_16150) - 3226919..3227662 (+) 744 WP_029974652.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  PXG99_RS16155 (PXG99_16155) - 3227649..3227948 (+) 300 WP_029974654.1 GIY-YIG nuclease family protein -
  PXG99_RS16160 (PXG99_16160) rsmI 3227923..3228804 (+) 882 WP_029974655.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  PXG99_RS16165 (PXG99_16165) abrB 3228853..3229143 (-) 291 WP_202622640.1 transition state genes transcriptional regulator AbrB Regulator
  PXG99_RS16170 (PXG99_16170) metG 3229626..3231617 (+) 1992 WP_029974660.1 methionine--tRNA ligase -
  PXG99_RS16175 (PXG99_16175) - 3231694..3232461 (+) 768 WP_021494159.1 TatD family hydrolase -
  PXG99_RS16180 (PXG99_16180) - 3232596..3233921 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10739.55 Da        Isoelectric Point: 6.3419

>NTDB_id=796267 PXG99_RS16165 WP_202622640.1 3228853..3229143(-) (abrB) [Bacillus velezensis strain XRD006]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
ADQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=796267 PXG99_RS16165 WP_202622640.1 3228853..3229143(-) (abrB) [Bacillus velezensis strain XRD006]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGATCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

96.875

100

0.969