Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   PXG99_RS12885 Genome accession   NZ_CP118911
Coordinates   2584729..2585166 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain XRD006     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2579729..2590166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXG99_RS12870 (PXG99_12870) - 2582615..2582977 (-) 363 WP_007409352.1 helix-turn-helix domain-containing protein -
  PXG99_RS12875 (PXG99_12875) hxlA 2583209..2583844 (+) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  PXG99_RS12880 (PXG99_12880) hxlB 2583841..2584398 (+) 558 WP_021494205.1 6-phospho-3-hexuloisomerase -
  PXG99_RS12885 (PXG99_12885) nucA/comI 2584729..2585166 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  PXG99_RS12890 (PXG99_12890) nin/comJ 2585187..2585585 (+) 399 WP_029973909.1 competence protein ComJ Regulator
  PXG99_RS12895 (PXG99_12895) - 2585626..2587062 (-) 1437 WP_014416872.1 family 1 glycosylhydrolase -
  PXG99_RS12900 (PXG99_12900) - 2587166..2587489 (-) 324 WP_007409357.1 YckD family protein -
  PXG99_RS12905 (PXG99_12905) - 2587561..2587995 (-) 435 WP_014416871.1 RDD family protein -
  PXG99_RS12910 (PXG99_12910) - 2588010..2589146 (-) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=796255 PXG99_RS12885 WP_003156588.1 2584729..2585166(+) (nucA/comI) [Bacillus velezensis strain XRD006]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=796255 PXG99_RS12885 WP_003156588.1 2584729..2585166(+) (nucA/comI) [Bacillus velezensis strain XRD006]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641