Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   PXG99_RS08745 Genome accession   NZ_CP118911
Coordinates   1795627..1796205 (-) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain XRD006     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1790627..1801205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXG99_RS08710 (PXG99_08710) - 1790819..1792288 (+) 1470 WP_029973178.1 sodium:solute symporter -
  PXG99_RS08715 (PXG99_08715) - 1792330..1792647 (+) 318 WP_003155166.1 YbjQ family protein -
  PXG99_RS08720 (PXG99_08720) - 1792680..1792949 (-) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  PXG99_RS08725 (PXG99_08725) - 1793145..1793855 (+) 711 WP_029973179.1 YrpD family protein -
  PXG99_RS08730 (PXG99_08730) - 1794084..1794593 (-) 510 WP_029973182.1 MepB family protein -
  PXG99_RS08735 (PXG99_08735) - 1794716..1795087 (-) 372 WP_029973183.1 iron chaperone -
  PXG99_RS08740 (PXG99_08740) - 1795114..1795481 (-) 368 Protein_1742 iron chaperone -
  PXG99_RS08745 (PXG99_08745) comK 1795627..1796205 (-) 579 WP_003155179.1 competence protein ComK Regulator
  PXG99_RS08750 (PXG99_08750) - 1796520..1796753 (+) 234 WP_007610478.1 IDEAL domain-containing protein -
  PXG99_RS08755 (PXG99_08755) - 1796784..1797641 (-) 858 WP_007610477.1 SDR family oxidoreductase -
  PXG99_RS08760 (PXG99_08760) - 1797766..1799289 (+) 1524 WP_014417355.1 FAD-dependent oxidoreductase -
  PXG99_RS08765 (PXG99_08765) - 1799412..1800704 (+) 1293 WP_024085090.1 globin-coupled sensor protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=796244 PXG99_RS08745 WP_003155179.1 1795627..1796205(-) (comK) [Bacillus velezensis strain XRD006]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=796244 PXG99_RS08745 WP_003155179.1 1795627..1796205(-) (comK) [Bacillus velezensis strain XRD006]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCGCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823