Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   PXG99_RS06965 Genome accession   NZ_CP118911
Coordinates   1467225..1467689 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain XRD006     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1462225..1472689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXG99_RS06940 (PXG99_06940) - 1462732..1463280 (-) 549 WP_029973676.1 hypothetical protein -
  PXG99_RS06945 (PXG99_06945) fadH 1463394..1464158 (-) 765 WP_029973675.1 2,4-dienoyl-CoA reductase -
  PXG99_RS06950 (PXG99_06950) - 1464302..1465165 (+) 864 WP_021493757.1 metallophosphoesterase -
  PXG99_RS06955 (PXG99_06955) - 1465240..1465734 (+) 495 WP_089072484.1 L,D-transpeptidase family protein -
  PXG99_RS06960 (PXG99_06960) - 1465810..1467102 (+) 1293 WP_029973674.1 MFS transporter -
  PXG99_RS06965 (PXG99_06965) kre 1467225..1467689 (+) 465 WP_003154622.1 YkyB family protein Regulator
  PXG99_RS06970 (PXG99_06970) cheV 1467732..1468644 (-) 913 Protein_1389 chemotaxis protein CheV -
  PXG99_RS06975 (PXG99_06975) - 1468833..1468994 (+) 162 WP_099721949.1 hypothetical protein -
  PXG99_RS06980 (PXG99_06980) - 1469195..1470364 (+) 1170 WP_007611083.1 aminotransferase A -
  PXG99_RS06985 (PXG99_06985) - 1470389..1472209 (-) 1821 WP_021493759.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=796233 PXG99_RS06965 WP_003154622.1 1467225..1467689(+) (kre) [Bacillus velezensis strain XRD006]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=796233 PXG99_RS06965 WP_003154622.1 1467225..1467689(+) (kre) [Bacillus velezensis strain XRD006]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929