Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PXG99_RS06755 Genome accession   NZ_CP118911
Coordinates   1431059..1431343 (-) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain XRD006     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1426059..1436343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXG99_RS06735 (PXG99_06735) ade 1426165..1427898 (-) 1734 WP_029973685.1 adenine deaminase -
  PXG99_RS06740 (PXG99_06740) ktrC 1428047..1428712 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  PXG99_RS06745 (PXG99_06745) - 1428753..1429580 (-) 828 WP_029973684.1 gamma-glutamylcyclotransferase family protein -
  PXG99_RS06750 (PXG99_06750) - 1429582..1430886 (-) 1305 WP_014417634.1 ATP-binding protein -
  PXG99_RS06755 (PXG99_06755) abrB 1431059..1431343 (-) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  PXG99_RS06760 (PXG99_06760) mreBH 1431614..1432621 (+) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  PXG99_RS06765 (PXG99_06765) - 1432693..1432827 (+) 135 WP_003154559.1 protein YkpC -
  PXG99_RS06770 (PXG99_06770) - 1432928..1434160 (+) 1233 WP_007409644.1 aminopeptidase -
  PXG99_RS06775 (PXG99_06775) - 1434189..1435085 (-) 897 WP_029973683.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=796231 PXG99_RS06755 WP_024085249.1 1431059..1431343(-) (abrB) [Bacillus velezensis strain XRD006]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=796231 PXG99_RS06755 WP_024085249.1 1431059..1431343(-) (abrB) [Bacillus velezensis strain XRD006]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543