Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   PXG99_RS05315 Genome accession   NZ_CP118911
Coordinates   1035578..1036012 (-) Length   144 a.a.
NCBI ID   WP_007611576.1    Uniprot ID   A0A172XIP3
Organism   Bacillus velezensis strain XRD006     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1030578..1041012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXG99_RS05280 (PXG99_05280) - 1030593..1030946 (+) 354 WP_029973435.1 multidrug efflux SMR transporter -
  PXG99_RS05285 (PXG99_05285) - 1030960..1031412 (-) 453 WP_014305039.1 OsmC family protein -
  PXG99_RS05290 (PXG99_05290) - 1031472..1032179 (-) 708 WP_014417828.1 poly-gamma-glutamate hydrolase family protein -
  PXG99_RS05295 (PXG99_05295) - 1032435..1032667 (-) 233 Protein_1054 hypothetical protein -
  PXG99_RS05300 (PXG99_05300) - 1032846..1034174 (+) 1329 WP_014417826.1 S8 family peptidase -
  PXG99_RS05305 (PXG99_05305) - 1034367..1034729 (+) 363 WP_007410383.1 hypothetical protein -
  PXG99_RS05310 (PXG99_05310) - 1034763..1035518 (-) 756 WP_022553315.1 YoaK family protein -
  PXG99_RS05315 (PXG99_05315) nucA/comI 1035578..1036012 (-) 435 WP_007611576.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  PXG99_RS05320 (PXG99_05320) - 1036301..1037512 (+) 1212 WP_025649439.1 cytochrome P450 -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15528.47 Da        Isoelectric Point: 7.2418

>NTDB_id=796226 PXG99_RS05315 WP_007611576.1 1035578..1036012(-) (nucA/comI) [Bacillus velezensis strain XRD006]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=796226 PXG99_RS05315 WP_007611576.1 1035578..1036012(-) (nucA/comI) [Bacillus velezensis strain XRD006]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATACT
CCGACGGCACGAGAGTACTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172XIP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486