Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   PXI10_RS08855 Genome accession   NZ_CP118900
Coordinates   1691287..1691598 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain BDS5     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1686287..1696598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXI10_RS08835 (PXI10_08835) ctsE 1687156..1688715 (-) 1560 WP_002858863.1 GspE/PulE family protein Machinery gene
  PXI10_RS08840 (PXI10_08840) ctsX 1688705..1689292 (-) 588 WP_002858864.1 hypothetical protein Machinery gene
  PXI10_RS08845 (PXI10_08845) ctsP 1689296..1689904 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  PXI10_RS08850 (PXI10_08850) ctsD 1689897..1691309 (-) 1413 WP_032590707.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  PXI10_RS08855 (PXI10_08855) ctsR 1691287..1691598 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  PXI10_RS08860 (PXI10_08860) nifJ 1691622..1695182 (-) 3561 WP_032590705.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  PXI10_RS08865 (PXI10_08865) - 1695275..1695916 (-) 642 WP_002872339.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=796151 PXI10_RS08855 WP_002855438.1 1691287..1691598(-) (ctsR) [Campylobacter jejuni strain BDS5]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=796151 PXI10_RS08855 WP_002855438.1 1691287..1691598(-) (ctsR) [Campylobacter jejuni strain BDS5]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATTCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1