Detailed information    

insolico Bioinformatically predicted

Overview


Name   kpsS   Type   Regulator
Locus tag   PXI10_RS08575 Genome accession   NZ_CP118900
Coordinates   1634044..1635228 (-) Length   394 a.a.
NCBI ID   WP_002868491.1    Uniprot ID   A0A0Q3JWH1
Organism   Campylobacter jejuni strain BDS5     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1629044..1640228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXI10_RS08550 (PXI10_08550) fliL 1630192..1630728 (+) 537 WP_002868488.1 flagellar basal body-associated protein FliL -
  PXI10_RS08555 (PXI10_08555) acpS 1630728..1631075 (+) 348 WP_002825806.1 holo-ACP synthase -
  PXI10_RS08560 (PXI10_08560) - 1631076..1631495 (-) 420 WP_002780440.1 hypothetical protein -
  PXI10_RS08565 (PXI10_08565) - 1631492..1632853 (-) 1362 WP_032582304.1 cytochrome P450 -
  PXI10_RS08570 (PXI10_08570) - 1632850..1633971 (-) 1122 WP_057032793.1 hypothetical protein -
  PXI10_RS08575 (PXI10_08575) kpsS 1634044..1635228 (-) 1185 WP_002868491.1 capsule polysaccharide modification protein KpsS Regulator
  PXI10_RS08580 (PXI10_08580) kpsC 1635225..1637123 (-) 1899 Protein_1669 capsular polysaccharide biosynthesis protein -
  PXI10_RS08585 (PXI10_08585) - 1637170..1637892 (-) 723 WP_032590580.1 inositol monophosphatase family protein -
  PXI10_RS08590 (PXI10_08590) - 1637892..1638383 (-) 492 WP_032590583.1 YhcH/YjgK/YiaL family protein -
  PXI10_RS08595 (PXI10_08595) - 1638383..1639315 (-) 933 WP_032590584.1 phosphoglycerate dehydrogenase -
  PXI10_RS08600 (PXI10_08600) - 1639305..1640015 (-) 711 WP_060806503.1 acylneuraminate cytidylyltransferase -

Sequence


Protein


Download         Length: 394 a.a.        Molecular weight: 46855.56 Da        Isoelectric Point: 9.9031

>NTDB_id=796145 PXI10_RS08575 WP_002868491.1 1634044..1635228(-) (kpsS) [Campylobacter jejuni strain BDS5]
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAMKMKKNQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQNKKI
DAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYH
YKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=796145 PXI10_RS08575 WP_002868491.1 1634044..1635228(-) (kpsS) [Campylobacter jejuni strain BDS5]
ATGAGATTTAGCACTAAAATTAAAAAAGAATTTAGCGGTAAAAATGTTTTACTCTTGCAAGGACCTGTGGGAAATTTTTT
TCATCATCTTGCAATGAAAATGAAAAAAAACCAAACCAAAGTTTTTAAACTCAATTTTAACGGCGGAGATTTTTTTTTCT
ATCCTAGTGGAACGAGGTGTAAGTGTGATGAAAAAGATCTTGAAAATTTCTATAGAGATTTTTTTCAAAATAAAAAAATC
GATGCTATTTTAATGTATAATGATTGTCGCATTATACATGCTAAGGCTATTAAAGTGGCTAAAGAATTAGGAATTGAAAT
ATGGATTTTTGAAGAAGGATATTTAAGGCCTTATTGTATTACTTTGGAAAAAGATGGGGTGAATGCAAATTCTTCTTTAC
CGCGTGATAAAAATTTTTATCTTTCTCAAAATATTTTTACCAAAGAAAGCATAAAAGAAATTCCAGGTGGATTTAAATTT
ATGGCTTTTGATGCTTTTTTGTATTGGTTGTTTGCTTTTATTTTGGCTCCATTTTTTAACAACAAACTTCATCATCGCAC
TTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCATTGTATAGAAAGTATCTTTATAAGATTACAGAAAAAAAACTAA
ATGAAAAGATTTATAATTTAGAAAAAAAGTACTTTTTGGCGATTTTACAAGTTTATAGCGATACGCAAATTAAATATCAT
TACAAAAAAAGCATAGAGCACTTTATAGAGGAAACCATACTTTCTTTTGCAAACCATGCAAGAGCTAAATCTTATCTAGT
TTTTAAACACCATCCCATGGATAGGGGCTATAAGAATTATTCTAAACTCATAAATGATTTAAGTCAAAAATATCATGTAG
AAGGAAGGGTTTTATATGTTCATGATACCCACTTGCCAGTTCTTTTAAGAAAGGCTTTGGGTTGTATTACTATAAATTCA
ACAGTAGGCCTTAGTGCTATTTTAGAAGGCTGTCCGACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCTTATC
TTATCCAAAAAAACTTCAATTTTTTTGGCGTGAAGCTCATGCTTATAAACCCAATCCTGTTTTGGTATGTAATTTTAAAA
AATATCTTTTACAAACTAATCAATTCAACGGCAATTTTTATAAAAATTTCTTTTTAGACAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0Q3JWH1

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.731

100

0.987