Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RAM32_RS13115 Genome accession   NZ_CP132361
Coordinates   2659969..2660709 (-) Length   246 a.a.
NCBI ID   WP_000216873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UNC_SA56     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2654969..2665709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM32_RS13090 (RAM32_13080) hemH 2655845..2656768 (-) 924 WP_000162881.1 ferrochelatase -
  RAM32_RS13095 (RAM32_13085) hemE 2656826..2657863 (-) 1038 WP_000233526.1 uroporphyrinogen decarboxylase -
  RAM32_RS13100 (RAM32_13090) - 2657853..2657963 (-) 111 WP_001790154.1 hypothetical protein -
  RAM32_RS13105 (RAM32_13095) traP 2658126..2658629 (+) 504 WP_000737976.1 signal transduction protein TRAP -
  RAM32_RS13110 (RAM32_13100) ecsB 2658753..2659976 (-) 1224 WP_000551840.1 ABC transporter permease EcsB -
  RAM32_RS13115 (RAM32_13105) pptA 2659969..2660709 (-) 741 WP_000216873.1 ABC transporter ATP-binding protein EcsA Regulator
  RAM32_RS13120 (RAM32_13110) - 2660843..2661265 (+) 423 WP_000004981.1 HIT family protein -
  RAM32_RS13125 (RAM32_13115) - 2661407..2661772 (+) 366 WP_000648118.1 YtxH domain-containing protein -
  RAM32_RS13130 (RAM32_13120) - 2662505..2663062 (+) 558 WP_000477954.1 DUF3267 domain-containing protein -
  RAM32_RS13135 (RAM32_13125) - 2663267..2664229 (+) 963 WP_000782121.1 foldase protein PrsA -
  RAM32_RS13140 (RAM32_13130) yhaM 2664350..2665291 (-) 942 WP_306181355.1 3'-5' exoribonuclease YhaM -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27701.09 Da        Isoelectric Point: 4.7455

>NTDB_id=796140 RAM32_RS13115 WP_000216873.1 2659969..2660709(-) (pptA) [Staphylococcus aureus strain UNC_SA56]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHKQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=796140 RAM32_RS13115 WP_000216873.1 2659969..2660709(-) (pptA) [Staphylococcus aureus strain UNC_SA56]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATTGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATTTATGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGCCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTATTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAAACAAACATTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545