Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | PXI10_RS07265 | Genome accession | NZ_CP118900 |
| Coordinates | 1370269..1371228 (+) | Length | 319 a.a. |
| NCBI ID | WP_070309048.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain BDS5 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1354470..1383448 | 1370269..1371228 | within | 0 |
Gene organization within MGE regions
Location: 1354470..1383448
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PXI10_RS07195 (PXI10_07195) | pglI | 1354470..1355399 (-) | 930 | WP_002867212.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| PXI10_RS07200 (PXI10_07200) | pglH | 1355392..1356471 (-) | 1080 | WP_002859237.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| PXI10_RS07205 (PXI10_07205) | pglK | 1356468..1358162 (-) | 1695 | WP_275054931.1 | ABC-type lipopolysaccharide transporter PglK | - |
| PXI10_RS07210 (PXI10_07210) | galE | 1358156..1359142 (-) | 987 | WP_057031449.1 | UDP-glucose 4-epimerase GalE | - |
| PXI10_RS07215 (PXI10_07215) | - | 1359200..1359994 (-) | 795 | WP_002935018.1 | 3'-5' exonuclease | - |
| PXI10_RS07220 (PXI10_07220) | waaC | 1360061..1361089 (+) | 1029 | WP_002859241.1 | lipopolysaccharide heptosyltransferase I | - |
| PXI10_RS07225 (PXI10_07225) | htrB | 1361079..1361966 (+) | 888 | WP_002871713.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| PXI10_RS07230 (PXI10_07230) | - | 1361963..1363513 (+) | 1551 | WP_032591562.1 | glycosyltransferase | - |
| PXI10_RS07235 (PXI10_07235) | - | 1363517..1364695 (+) | 1179 | WP_032591565.1 | glycosyltransferase family 9 protein | - |
| PXI10_RS07240 (PXI10_07240) | - | 1364692..1365831 (+) | 1140 | WP_032591568.1 | glycosyltransferase family 4 protein | - |
| PXI10_RS07245 (PXI10_07245) | - | 1365828..1367027 (-) | 1200 | WP_032591570.1 | glycosyltransferase family 8 protein | - |
| PXI10_RS07250 (PXI10_07250) | - | 1367020..1368171 (-) | 1152 | WP_032591573.1 | glycosyltransferase family 8 protein | - |
| PXI10_RS07255 (PXI10_07255) | - | 1368184..1369332 (-) | 1149 | WP_079344032.1 | FkbM family methyltransferase | - |
| PXI10_RS07260 (PXI10_07260) | waaV | 1369395..1370210 (-) | 816 | WP_060806422.1 | glycosyltransferase family 2 protein | - |
| PXI10_RS07265 (PXI10_07265) | waaF | 1370269..1371228 (+) | 960 | WP_070309048.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| PXI10_RS07270 (PXI10_07270) | gmhA | 1371209..1371769 (-) | 561 | WP_020247045.1 | D-sedoheptulose 7-phosphate isomerase | - |
| PXI10_RS07275 (PXI10_07275) | rfaE1 | 1371766..1373151 (-) | 1386 | WP_060806424.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| PXI10_RS07280 (PXI10_07280) | rfaD | 1373144..1374097 (-) | 954 | WP_002859254.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| PXI10_RS07285 (PXI10_07285) | gmhB | 1374098..1374659 (-) | 562 | Protein_1419 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| PXI10_RS07290 (PXI10_07290) | - | 1374740..1375042 (+) | 303 | WP_002852762.1 | cytochrome c | - |
| PXI10_RS07295 (PXI10_07295) | ccoS | 1375065..1375271 (-) | 207 | WP_002852798.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| PXI10_RS07300 (PXI10_07300) | - | 1375268..1377625 (-) | 2358 | WP_079757683.1 | heavy metal translocating P-type ATPase | - |
| PXI10_RS07305 (PXI10_07305) | rho | 1377734..1379032 (+) | 1299 | WP_002852852.1 | transcription termination factor Rho | - |
| PXI10_RS07310 (PXI10_07310) | dnaX | 1379036..1380565 (+) | 1530 | WP_002878814.1 | DNA polymerase III subunit gamma/tau | - |
| PXI10_RS07315 (PXI10_07315) | - | 1380562..1381083 (-) | 522 | WP_002853472.1 | DUF2165 family protein | - |
| PXI10_RS07320 (PXI10_07320) | copA | 1381155..1383254 (-) | 2100 | WP_060806426.1 | copper-translocating P-type ATPase CopA | - |
| PXI10_RS07325 (PXI10_07325) | - | 1383254..1383448 (-) | 195 | WP_002852760.1 | cation transporter | - |
Sequence
Protein
Download Length: 319 a.a. Molecular weight: 36789.44 Da Isoelectric Point: 10.4034
>NTDB_id=796138 PXI10_RS07265 WP_070309048.1 1370269..1371228(+) (waaF) [Campylobacter jejuni strain BDS5]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQVLSLRKKLGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLHIKAHLKDLKLPFKLKFQSLLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCDEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GSMHISAVYKVKTVAIFGPTKFTQTSPWQNENARWVHLNLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQVLSLRKKLGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLHIKAHLKDLKLPFKLKFQSLLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCDEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GSMHISAVYKVKTVAIFGPTKFTQTSPWQNENARWVHLNLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL
Nucleotide
Download Length: 960 bp
>NTDB_id=796138 PXI10_RS07265 WP_070309048.1 1370269..1371228(+) (waaF) [Campylobacter jejuni strain BDS5]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGTCCTATCTTTACGCAAAAAACTTGGCAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTCACATAAAAGCTCACCTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAGCCTTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGTCAAAGTCATGAAATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTCTGCGATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAACCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGTGATCTTTTCATCACAAATGACAGT
GGCTCTATGCACATAAGTGCGGTTTACAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACCTCACC
TTGGCAAAATGAAAATGCAAGATGGGTGCATTTAAATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATAA
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGTCCTATCTTTACGCAAAAAACTTGGCAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTCACATAAAAGCTCACCTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAGCCTTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGTCAAAGTCATGAAATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTCTGCGATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAACCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGTGATCTTTTCATCACAAATGACAGT
GGCTCTATGCACATAAGTGCGGTTTACAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACCTCACC
TTGGCAAAATGAAAATGCAAGATGGGTGCATTTAAATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
91.85 |
100 |
0.919 |