Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   PYV58_RS20870 Genome accession   NZ_CP118892
Coordinates   4457942..4458268 (-) Length   108 a.a.
NCBI ID   WP_004718506.1    Uniprot ID   A0A077KSH9
Organism   Acinetobacter sp. TAC-1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4452942..4463268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYV58_RS20850 (PYV58_20850) - 4452992..4453714 (-) 723 WP_034617656.1 FHA domain-containing protein -
  PYV58_RS20855 (PYV58_20855) gspD 4453899..4456148 (-) 2250 WP_034617653.1 type II secretion system secretin GspD -
  PYV58_RS20860 (PYV58_20860) - 4456190..4457035 (-) 846 WP_004818497.1 type II secretion system protein N -
  PYV58_RS20865 (PYV58_20865) gspN 4457035..4457778 (-) 744 WP_004818496.1 type II secretion system protein N -
  PYV58_RS20870 (PYV58_20870) hns 4457942..4458268 (-) 327 WP_004718506.1 H-NS histone family protein Regulator
  PYV58_RS20875 (PYV58_20875) - 4458494..4458931 (-) 438 WP_034617650.1 acyl-CoA thioesterase -
  PYV58_RS20880 (PYV58_20880) - 4458941..4460134 (-) 1194 WP_034617647.1 hypothetical protein -
  PYV58_RS20885 (PYV58_20885) - 4460139..4460969 (-) 831 WP_034617644.1 hypothetical protein -
  PYV58_RS20890 (PYV58_20890) - 4460966..4461748 (-) 783 WP_034617641.1 uroporphyrinogen-III synthase -
  PYV58_RS20895 (PYV58_20895) hemC 4461762..4462685 (-) 924 WP_034617638.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12384.15 Da        Isoelectric Point: 8.4038

>NTDB_id=796121 PYV58_RS20870 WP_004718506.1 4457942..4458268(-) (hns) [Acinetobacter sp. TAC-1]
MMPDISNLSVEELRKLTAEAEALIESKKDQAVEDAYNKIIEIAQSAGLTLEQFIEYGAQKRKKTTRKAVEPRYRNKKDTS
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=796121 PYV58_RS20870 WP_004718506.1 4457942..4458268(-) (hns) [Acinetobacter sp. TAC-1]
ATGATGCCTGATATTAGTAATTTATCGGTTGAAGAGTTAAGAAAGTTAACAGCTGAAGCAGAAGCTTTAATTGAAAGTAA
AAAAGACCAAGCAGTTGAAGATGCCTATAATAAAATTATTGAAATTGCGCAATCTGCTGGTTTAACTTTAGAACAGTTTA
TTGAATACGGCGCGCAAAAGCGTAAAAAGACAACGCGTAAAGCTGTTGAGCCGCGTTACCGCAATAAAAAAGATACTTCT
GAAACTTGGACTGGACGCGGTAAACAACCACGTTGGTTGGTTGCAGAAATCGAAAAAGGTGCAAAATTAGAAGATTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A077KSH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

78.704

100

0.787