Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   PYV58_RS12115 Genome accession   NZ_CP118892
Coordinates   2575759..2576142 (-) Length   127 a.a.
NCBI ID   WP_004821236.1    Uniprot ID   A0AAX3PF86
Organism   Acinetobacter sp. TAC-1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2570759..2581142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYV58_RS12085 (PYV58_12085) tadA 2570833..2571357 (-) 525 WP_034610219.1 tRNA adenosine(34) deaminase TadA -
  PYV58_RS12090 (PYV58_12090) - 2571364..2572485 (-) 1122 WP_034610216.1 enoyl-CoA hydratase/isomerase family protein -
  PYV58_RS12095 (PYV58_12095) ung 2572482..2573195 (-) 714 WP_004821244.1 uracil-DNA glycosylase -
  PYV58_RS12100 (PYV58_12100) - 2573270..2573866 (-) 597 WP_004821241.1 6-carboxytetrahydropterin synthase -
  PYV58_RS12105 (PYV58_12105) gspK 2574099..2575055 (-) 957 WP_004821240.1 type II secretion system minor pseudopilin GspK -
  PYV58_RS12110 (PYV58_12110) xcpW 2575103..2575759 (-) 657 WP_081407352.1 type II secretion system minor pseudopilin GspJ Machinery gene
  PYV58_RS12115 (PYV58_12115) xcpV 2575759..2576142 (-) 384 WP_004821236.1 type II secretion system minor pseudopilin GspI Machinery gene
  PYV58_RS12120 (PYV58_12120) - 2576129..2576695 (-) 567 WP_034610211.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PYV58_RS12125 (PYV58_12125) - 2576701..2577315 (-) 615 WP_004821232.1 TetR/AcrR family transcriptional regulator -
  PYV58_RS12130 (PYV58_12130) - 2577403..2578176 (-) 774 WP_004720827.1 TatD family hydrolase -
  PYV58_RS12135 (PYV58_12135) - 2578204..2578545 (-) 342 WP_004821228.1 PilZ domain-containing protein -
  PYV58_RS12140 (PYV58_12140) - 2578572..2579552 (-) 981 WP_034610209.1 DNA polymerase III subunit delta' -
  PYV58_RS12145 (PYV58_12145) kdsB 2579620..2580381 (-) 762 WP_034610208.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14080.38 Da        Isoelectric Point: 10.0997

>NTDB_id=796104 PYV58_RS12115 WP_004821236.1 2575759..2576142(-) (xcpV) [Acinetobacter sp. TAC-1]
MKKNKGFTLIEVVVALAIFAVAAMALTKVAMQYTQSTANAILRTKAQFVAQNEISMMMINREWLSGTSSKQVTTQGETWQ
VDKKAESTLSPNVQKIDVQVSLFNPDTGKVEAGITNMVFFNYPIKEK

Nucleotide


Download         Length: 384 bp        

>NTDB_id=796104 PYV58_RS12115 WP_004821236.1 2575759..2576142(-) (xcpV) [Acinetobacter sp. TAC-1]
ATGAAGAAAAATAAAGGCTTTACTTTAATTGAGGTGGTTGTGGCTTTGGCGATTTTTGCAGTCGCAGCAATGGCTTTGAC
CAAAGTCGCGATGCAATATACGCAGTCGACAGCCAATGCGATTTTACGAACCAAGGCTCAGTTTGTTGCACAGAATGAAA
TCTCAATGATGATGATTAATCGTGAATGGCTGTCAGGAACGTCATCCAAACAAGTCACCACACAAGGTGAAACTTGGCAG
GTAGATAAAAAAGCAGAATCTACACTGAGCCCAAATGTACAAAAAATAGATGTGCAAGTGAGCCTTTTTAATCCTGATAC
GGGTAAAGTAGAAGCAGGGATTACCAATATGGTGTTCTTTAATTATCCGATCAAAGAAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Type II secretion system (T2SS), protein I (T2SSI)

(43-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

79.2

98.425

0.78