Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   PYV58_RS02620 Genome accession   NZ_CP118892
Coordinates   556032..556835 (+) Length   267 a.a.
NCBI ID   WP_004725881.1    Uniprot ID   A0A6A1RK51
Organism   Acinetobacter sp. TAC-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 551032..561835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYV58_RS02595 (PYV58_02595) - 551682..552968 (+) 1287 WP_275059700.1 glycosyltransferase family 1 protein -
  PYV58_RS02600 (PYV58_02600) - 553000..553551 (+) 552 WP_034612334.1 phosphatase PAP2 family protein -
  PYV58_RS02605 (PYV58_02605) iscX 553768..553968 (+) 201 WP_004725877.1 Fe-S cluster assembly protein IscX -
  PYV58_RS02610 (PYV58_02610) ndk 554112..554543 (+) 432 WP_004725878.1 nucleoside-diphosphate kinase -
  PYV58_RS02615 (PYV58_02615) rlmN 554722..555966 (+) 1245 WP_004725880.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  PYV58_RS02620 (PYV58_02620) pilF 556032..556835 (+) 804 WP_004725881.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  PYV58_RS02625 (PYV58_02625) - 556826..557614 (+) 789 WP_004816988.1 helix-turn-helix domain-containing protein -
  PYV58_RS02630 (PYV58_02630) ispG 557636..558751 (+) 1116 WP_004725885.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  PYV58_RS02635 (PYV58_02635) hisS 558748..560043 (+) 1296 WP_034612341.1 histidine--tRNA ligase -
  PYV58_RS02640 (PYV58_02640) - 560074..560775 (+) 702 WP_004816992.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29946.10 Da        Isoelectric Point: 9.2123

>NTDB_id=796098 PYV58_RS02620 WP_004725881.1 556032..556835(+) (pilF) [Acinetobacter sp. TAC-1]
MYQKAVVILAIGLSALVVQGCQTTNSDTIIKKDPEKAVKVRTQLAAEYIRTGDLDAAKRALDQALETDSRDSAANMMMGV
LLQQEGSKISMEKADGYFKRAISSDSKNAQARNNYGTYLFVTERYNDAIEQLSIAGAALGYDQRYKALENLGRVYLKVGD
VANAEKAFKQALQVNRDSIISLVELSEIFYLQQKSAQASQLYEQYVRLVGQDKQGARALWIGLRIARANNDQMGMQVLVN
QLRALFPDSKEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=796098 PYV58_RS02620 WP_004725881.1 556032..556835(+) (pilF) [Acinetobacter sp. TAC-1]
ATGTATCAAAAAGCAGTTGTAATATTGGCAATTGGTTTATCTGCATTGGTCGTACAGGGTTGTCAAACGACAAATTCAGA
CACAATAATAAAAAAAGATCCTGAAAAAGCCGTTAAAGTACGTACTCAGCTTGCTGCTGAATATATTCGTACAGGTGATT
TAGATGCTGCAAAACGCGCACTAGACCAAGCTTTAGAAACTGATTCACGTGATTCTGCGGCAAATATGATGATGGGTGTC
TTACTGCAACAAGAAGGCAGTAAGATCAGTATGGAAAAAGCAGACGGCTATTTTAAGCGTGCAATTTCCAGTGACTCAAA
AAATGCACAAGCTCGTAATAATTATGGAACATATTTATTTGTTACTGAGCGCTATAATGACGCGATTGAACAATTGAGTA
TAGCTGGTGCTGCGCTTGGCTATGATCAGCGTTACAAGGCTTTAGAAAATTTAGGTCGGGTTTACTTAAAAGTGGGTGAT
GTGGCAAATGCTGAAAAAGCATTCAAACAAGCTTTACAAGTCAATCGCGATTCGATTATTTCTCTGGTAGAGTTATCAGA
AATTTTCTATTTGCAACAAAAAAGTGCGCAAGCAAGTCAACTCTATGAGCAATATGTTCGTTTAGTAGGTCAGGACAAAC
AGGGTGCGAGAGCGCTTTGGATTGGTTTACGTATTGCACGTGCCAATAATGATCAGATGGGAATGCAAGTGTTGGTCAAC
CAACTGCGTGCATTGTTCCCGGACAGTAAAGAATATCAACGTTATCTGCAATTACAGTACAGTACTGAGGCCGTATGGAA
GTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_2)

(146-177)

Tetratricopeptide repeat (TPR_8)

(40-69)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A1RK51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

74.717

99.251

0.742
  pilF Acinetobacter baylyi ADP1

67.843

95.506

0.648