Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   PYV58_RS02410 Genome accession   NZ_CP118892
Coordinates   511404..512285 (+) Length   293 a.a.
NCBI ID   WP_004725801.1    Uniprot ID   N8YHY0
Organism   Acinetobacter sp. TAC-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 506404..517285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYV58_RS02380 (PYV58_02380) wrbA 506651..507244 (+) 594 WP_034617679.1 NAD(P)H:quinone oxidoreductase -
  PYV58_RS02385 (PYV58_02385) - 507354..507716 (-) 363 WP_004725792.1 hypothetical protein -
  PYV58_RS02390 (PYV58_02390) - 507940..508800 (-) 861 WP_034617683.1 acyl-CoA thioesterase II -
  PYV58_RS02395 (PYV58_02395) - 508954..509529 (-) 576 WP_004725796.1 xanthine phosphoribosyltransferase -
  PYV58_RS02400 (PYV58_02400) - 509633..510340 (-) 708 WP_081407413.1 DUF3108 domain-containing protein -
  PYV58_RS02405 (PYV58_02405) - 510491..511171 (-) 681 WP_034617687.1 hypothetical protein -
  PYV58_RS02410 (PYV58_02410) tonB2 511404..512285 (+) 882 WP_004725801.1 TonB family protein Machinery gene
  PYV58_RS02415 (PYV58_02415) - 512373..512627 (-) 255 WP_227504282.1 antibiotic biosynthesis monooxygenase -
  PYV58_RS02420 (PYV58_02420) - 512723..513634 (-) 912 WP_004725806.1 bestrophin family protein -
  PYV58_RS02425 (PYV58_02425) radC 513672..514394 (-) 723 WP_004725808.1 DNA repair protein RadC -
  PYV58_RS02430 (PYV58_02430) coaBC 514509..515774 (+) 1266 WP_004816940.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  PYV58_RS02435 (PYV58_02435) - 515937..516311 (+) 375 WP_004725812.1 cytochrome b562 -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33485.92 Da        Isoelectric Point: 7.4004

>NTDB_id=796096 PYV58_RS02410 WP_004725801.1 511404..512285(+) (tonB2) [Acinetobacter sp. TAC-1]
MIKKLFANTQHSEYWWQDALFVGAVSAAVIAHVLFLSVQFGMPQENNTSTKEIAISIRPSEDEIKDADFLAQANQQGSGT
FRKEHRISSDMPAQAEDKSAGDQQLEALEQIQQKRELKFEEKVLMTVLSWQKQAEQNDRKKAMEELQSQMQAKTAMVASL
EAQYLQKQQNFSKQQKIKTLDGIQAKQDASAGYLDKFREKVEMYGNRYYPDLAKQQRLSGEVRLMVILNNEGGIRAIRLI
ESSGHSILDEAAKNSVRKGAPFGRFDSKMKDISELRIVRTWRFDPAESEFEVR

Nucleotide


Download         Length: 882 bp        

>NTDB_id=796096 PYV58_RS02410 WP_004725801.1 511404..512285(+) (tonB2) [Acinetobacter sp. TAC-1]
ATGATAAAAAAATTATTTGCCAATACACAGCATTCTGAGTATTGGTGGCAAGACGCATTATTTGTTGGAGCTGTTTCTGC
AGCTGTCATTGCACATGTACTTTTTTTATCTGTTCAATTTGGAATGCCACAAGAAAATAATACCAGCACAAAAGAAATCG
CAATCAGTATTCGCCCAAGTGAAGATGAAATTAAAGATGCAGACTTTTTAGCGCAAGCAAATCAGCAAGGTTCTGGAACA
TTCCGTAAAGAGCATCGTATTTCAAGTGATATGCCAGCGCAAGCAGAAGACAAGAGTGCGGGTGATCAGCAACTGGAAGC
TTTAGAACAAATACAGCAAAAACGAGAATTGAAATTCGAAGAAAAAGTATTAATGACGGTTCTTAGCTGGCAAAAGCAGG
CCGAACAAAACGATCGCAAAAAGGCCATGGAAGAGTTGCAGAGCCAGATGCAAGCTAAAACGGCAATGGTGGCGAGTTTA
GAAGCTCAATATTTACAGAAACAACAAAATTTTAGTAAACAACAAAAAATTAAAACCTTAGATGGTATTCAAGCCAAACA
AGATGCATCTGCTGGATATTTAGATAAATTTCGTGAAAAAGTTGAGATGTATGGAAACCGATATTACCCAGACCTTGCCA
AACAGCAGCGTCTTTCGGGTGAGGTCCGTTTAATGGTCATTCTCAATAATGAGGGTGGGATTCGTGCTATACGATTGATT
GAAAGCTCAGGTCATTCAATCCTCGATGAAGCTGCCAAAAACTCAGTGCGTAAAGGGGCACCTTTTGGACGTTTTGATTC
AAAAATGAAAGATATTTCTGAACTGCGGATTGTGCGCACTTGGCGTTTTGACCCAGCTGAATCTGAATTTGAAGTGCGCT
AG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(206-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8YHY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

71.672

100

0.717