Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   PYV58_RS00840 Genome accession   NZ_CP118892
Coordinates   180852..182003 (-) Length   383 a.a.
NCBI ID   WP_034618195.1    Uniprot ID   A0A8X8GKX5
Organism   Acinetobacter sp. TAC-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 175852..187003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYV58_RS00820 (PYV58_00820) - 176784..177428 (+) 645 WP_004823720.1 TetR/AcrR family transcriptional regulator -
  PYV58_RS00825 (PYV58_00825) - 177571..178464 (+) 894 WP_004823721.1 DMT family transporter -
  PYV58_RS00830 (PYV58_00830) - 179085..179654 (-) 570 WP_004823722.1 Sua5/YciO/YrdC/YwlC family protein -
  PYV58_RS00835 (PYV58_00835) dprA 179701..180828 (-) 1128 WP_034618197.1 DNA-processing protein DprA Machinery gene
  PYV58_RS00840 (PYV58_00840) tsaP 180852..182003 (-) 1152 WP_034618195.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PYV58_RS00845 (PYV58_00845) def 182127..182657 (+) 531 WP_004723400.1 peptide deformylase -
  PYV58_RS00850 (PYV58_00850) - 182766..183233 (+) 468 WP_034618192.1 DUF2946 family protein -
  PYV58_RS00855 (PYV58_00855) - 183304..185376 (+) 2073 WP_034618191.1 TonB-dependent copper receptor -
  PYV58_RS00860 (PYV58_00860) - 185419..185661 (+) 243 WP_034618188.1 hypothetical protein -
  PYV58_RS00865 (PYV58_00865) - 185775..186983 (-) 1209 WP_034618187.1 oxygenase MpaB family protein -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41809.73 Da        Isoelectric Point: 9.2160

>NTDB_id=796086 PYV58_RS00840 WP_034618195.1 180852..182003(-) (tsaP) [Acinetobacter sp. TAC-1]
MKKVLTGITNFHAKGFKKQLLAVTLCLSAGFTYMEITHASPNTNPPALKSSAPNVYVVKRGDTLWDIAGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDKLLLCTLDGRPLIGVDEGDGCDGIIRRHQGGTSLRPQIRVESLNNAISVIPLSDIQPWLEHS
IVVNPESLQNIPYTIGAADNRVITGAGQTVYARGNGLVVGQRYGIYREGKPYTFLNAEGKKFNAGMELTEVASATAAAGE
NDVTTLELTKSYNAEVRKGDYVLPSYDAELPSLFYPTTTNEVSNGGKVVRVQGSIGTAAQYSVVTIDRGSLQGAKPGQVF
SIYQQGETVRDPKTKESVKLPSQKIGTLMIFKSFDHLSYAYILESNLPIKMGAEIKPPAIADN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=796086 PYV58_RS00840 WP_034618195.1 180852..182003(-) (tsaP) [Acinetobacter sp. TAC-1]
ATGAAAAAGGTTTTAACTGGCATAACGAACTTTCATGCCAAGGGGTTCAAGAAACAATTACTTGCTGTGACACTATGTTT
AAGTGCAGGATTCACTTACATGGAAATCACACACGCAAGTCCAAATACCAATCCACCTGCACTTAAATCCAGTGCACCCA
ATGTCTATGTGGTGAAACGTGGTGATACTTTATGGGATATTGCGGGGAAATTTTTAAGCAAGCCTTGGCGCTGGCCTGAA
ATCTGGGCAAGCAATAAGCATGTTAAAAATCCACATTGGATTTATCCAGGCGATAAATTATTGTTGTGTACTTTAGATGG
TCGCCCATTGATTGGTGTAGATGAAGGTGATGGTTGTGATGGAATTATTCGTCGTCATCAAGGTGGGACATCTTTACGCC
CTCAAATACGCGTTGAATCCTTAAATAATGCGATTTCAGTGATTCCATTATCAGATATTCAACCATGGTTAGAACACAGT
ATTGTGGTCAATCCTGAATCTTTACAGAACATCCCTTATACCATCGGCGCTGCTGATAATCGTGTGATAACGGGTGCAGG
ACAAACCGTTTATGCGCGTGGAAATGGCTTAGTCGTGGGTCAACGTTATGGGATCTATCGTGAAGGCAAACCTTATACTT
TCCTCAATGCTGAAGGCAAAAAGTTTAATGCAGGCATGGAATTAACTGAGGTTGCTTCTGCAACTGCGGCGGCTGGTGAA
AATGATGTCACCACCCTTGAGTTAACCAAAAGTTATAATGCTGAAGTGCGTAAGGGCGACTATGTCCTACCAAGCTATGA
TGCTGAATTGCCGAGTTTGTTCTATCCAACCACCACCAATGAAGTCAGCAATGGCGGTAAAGTGGTTCGTGTACAAGGTT
CAATTGGTACAGCAGCGCAATATAGTGTAGTCACCATTGACCGTGGTAGCTTACAAGGTGCTAAACCTGGGCAAGTCTTT
AGTATTTACCAACAAGGTGAAACAGTCCGTGACCCAAAAACCAAAGAGTCTGTGAAATTACCAAGTCAAAAAATTGGTAC
GCTGATGATCTTTAAGAGTTTTGATCACCTCAGCTATGCCTATATTTTGGAAAGTAATTTACCAATTAAAATGGGTGCTG
AAATTAAACCACCTGCAATTGCAGATAACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

63.021

100

0.632