Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PYH59_RS10750 Genome accession   NZ_CP118856
Coordinates   2116793..2117761 (-) Length   322 a.a.
NCBI ID   WP_017000362.1    Uniprot ID   A0AAX3W5Q2
Organism   Mammaliicoccus lentus strain 7046     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2115038..2145177 2116793..2117761 within 0


Gene organization within MGE regions


Location: 2115038..2145177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH59_RS10740 (PYH59_10740) - 2115038..2115838 (-) 801 WP_103268622.1 ATP-binding cassette domain-containing protein -
  PYH59_RS10745 (PYH59_10745) - 2115835..2116800 (-) 966 WP_017000361.1 iron chelate uptake ABC transporter family permease subunit -
  PYH59_RS10750 (PYH59_10750) ceuB 2116793..2117761 (-) 969 WP_017000362.1 ABC transporter permease Machinery gene
  PYH59_RS10755 (PYH59_10755) - 2117886..2118317 (-) 432 WP_103268623.1 FixH family protein -
  PYH59_RS10760 (PYH59_10760) nrdF 2118571..2119542 (-) 972 WP_064204699.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  PYH59_RS10765 (PYH59_10765) nrdE 2119570..2121675 (-) 2106 WP_017000365.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  PYH59_RS10770 (PYH59_10770) nrdI 2121647..2122036 (-) 390 WP_103268625.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  PYH59_RS10775 (PYH59_10775) - 2122410..2123294 (+) 885 WP_017000367.1 DMT family transporter -
  PYH59_RS10780 (PYH59_10780) queF 2123298..2123798 (+) 501 WP_017000368.1 preQ(1) synthase -
  PYH59_RS10785 (PYH59_10785) - 2124216..2125730 (+) 1515 WP_017000369.1 peptide MFS transporter -
  PYH59_RS10790 (PYH59_10790) - 2125906..2127408 (+) 1503 WP_103268627.1 peptide MFS transporter -
  PYH59_RS10795 (PYH59_10795) - 2127501..2128079 (-) 579 WP_017000371.1 5'-3'-deoxyribonucleotidase -
  PYH59_RS10800 (PYH59_10800) hisC 2128144..2129211 (-) 1068 WP_147641088.1 histidinol-phosphate transaminase -
  PYH59_RS10805 (PYH59_10805) - 2129443..2130957 (-) 1515 WP_147641089.1 ABC transporter permease/substrate-binding protein -
  PYH59_RS10810 (PYH59_10810) - 2130957..2131916 (-) 960 WP_017000373.1 ABC transporter ATP-binding protein -
  PYH59_RS10815 (PYH59_10815) recQ 2132008..2133786 (-) 1779 WP_017000374.1 DNA helicase RecQ -
  PYH59_RS10820 (PYH59_10820) - 2133808..2135679 (-) 1872 WP_282821367.1 ABC-F family ATP-binding cassette domain-containing protein -
  PYH59_RS10825 (PYH59_10825) - 2135765..2136580 (+) 816 WP_017000376.1 ZIP family metal transporter -
  PYH59_RS10830 (PYH59_10830) ltaS 2136689..2138629 (-) 1941 WP_017000377.1 polyglycerol-phosphate lipoteichoic acid synthase LtaS -
  PYH59_RS10835 (PYH59_10835) - 2138812..2139834 (-) 1023 WP_103268631.1 biotin-dependent carboxyltransferase family protein -
  PYH59_RS10840 (PYH59_10840) - 2139825..2140526 (-) 702 WP_017000379.1 carboxyltransferase domain-containing protein -
  PYH59_RS10845 (PYH59_10845) - 2140840..2142594 (-) 1755 WP_239724133.1 bifunctional anthranilate synthase component I family protein/class IV aminotransferase -
  PYH59_RS10850 (PYH59_10850) - 2142566..2143171 (-) 606 WP_167543713.1 aminodeoxychorismate/anthranilate synthase component II -
  PYH59_RS10855 (PYH59_10855) queC 2143375..2144043 (+) 669 WP_103268634.1 7-cyano-7-deazaguanine synthase QueC -
  PYH59_RS10860 (PYH59_10860) queD 2144043..2144474 (+) 432 WP_103268635.1 6-carboxytetrahydropterin synthase QueD -
  PYH59_RS10865 (PYH59_10865) queE 2144467..2145177 (+) 711 WP_282821373.1 7-carboxy-7-deazaguanine synthase QueE -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35426.02 Da        Isoelectric Point: 10.4592

>NTDB_id=795899 PYH59_RS10750 WP_017000362.1 2116793..2117761(-) (ceuB) [Mammaliicoccus lentus strain 7046]
MGKFLMRLDVLIVLLVIATFFSIFIGVSEVRPLQILSLTDEQKNILVSSRIPRTVSIIISGSCLAICGLIMQQLTRNKFV
SPTTAGTMDWAKLGVLISLILFPDTNILFKLLFATLLSLFGTMLFMQILQRIQFKDVIFIPLVGIMLGNIVSSFSTFVAL
RTNAVQSIGNFMQGNFSIITSGRYEILYISIPLLIIAYIFANKFTIAGMGKDFSVNLGLNYHRIVNIGLIIASIITALVV
VTVGMMPFLGLIIPNLISIFRGDHLKNALPHTAILGALFVMICDILGRLIIFPYEITIGLTIGVIGSFIFIVLLMKGRSK
NA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=795899 PYH59_RS10750 WP_017000362.1 2116793..2117761(-) (ceuB) [Mammaliicoccus lentus strain 7046]
ATGGGAAAGTTTTTAATGCGTTTAGATGTATTGATTGTATTATTAGTTATCGCAACATTCTTCTCAATATTTATTGGTGT
TTCAGAAGTGAGACCTTTACAAATATTAAGTCTTACAGATGAACAGAAAAATATACTAGTATCTAGTAGAATTCCTAGAA
CGGTTAGTATTATTATTTCAGGAAGTTGTTTAGCAATATGCGGTCTGATTATGCAACAGTTAACGAGAAATAAATTTGTT
TCTCCAACAACAGCAGGCACGATGGATTGGGCAAAGTTAGGTGTTTTAATTTCACTGATACTATTTCCAGACACGAATAT
ATTATTTAAACTTTTATTCGCAACATTACTAAGTTTATTTGGAACAATGTTATTCATGCAAATCCTACAAAGAATTCAAT
TCAAAGATGTTATTTTTATACCACTTGTAGGGATAATGCTTGGTAACATTGTTTCTAGTTTTTCAACCTTTGTTGCTTTA
AGAACAAACGCTGTTCAAAGCATAGGGAACTTTATGCAAGGTAACTTTTCTATCATTACTAGTGGGAGATACGAAATTTT
ATACATAAGTATTCCTTTATTGATAATTGCGTATATTTTTGCCAACAAATTTACGATTGCAGGTATGGGAAAGGACTTCA
GTGTCAACTTAGGATTAAATTACCATAGAATAGTTAATATTGGTTTAATCATTGCATCTATCATTACAGCACTAGTTGTG
GTAACAGTAGGAATGATGCCTTTCTTAGGGTTAATTATACCGAACTTAATTTCAATATTCAGAGGTGATCATCTTAAAAA
TGCTTTACCGCACACTGCAATCTTAGGCGCGTTGTTTGTTATGATATGCGACATTTTAGGAAGACTGATTATATTCCCAT
ACGAAATTACAATTGGTTTAACAATCGGTGTAATTGGTAGCTTTATTTTCATAGTTTTATTGATGAAAGGACGTTCGAAA
AATGCTTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.473

98.447

0.497