Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PYH69_RS03560 Genome accession   NZ_CP118848
Coordinates   697452..698420 (+) Length   322 a.a.
NCBI ID   WP_017000362.1    Uniprot ID   A0AAX3W5Q2
Organism   Mammaliicoccus lentus strain 7048     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 687134..700175 697452..698420 within 0


Gene organization within MGE regions


Location: 687134..700175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH69_RS03515 (PYH69_03515) - 687134..687712 (+) 579 WP_017000371.1 5'-3'-deoxyribonucleotidase -
  PYH69_RS03520 (PYH69_03520) - 687805..689307 (-) 1503 WP_017000370.1 peptide MFS transporter -
  PYH69_RS03525 (PYH69_03525) - 689483..690997 (-) 1515 WP_017000369.1 peptide MFS transporter -
  PYH69_RS03530 (PYH69_03530) queF 691415..691915 (-) 501 WP_017000368.1 preQ(1) synthase -
  PYH69_RS03535 (PYH69_03535) - 691919..692803 (-) 885 WP_135021479.1 DMT family transporter -
  PYH69_RS03540 (PYH69_03540) nrdI 693177..693566 (+) 390 WP_103268625.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  PYH69_RS03545 (PYH69_03545) nrdE 693538..695643 (+) 2106 WP_017000365.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  PYH69_RS03550 (PYH69_03550) nrdF 695671..696642 (+) 972 WP_064204699.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  PYH69_RS03555 (PYH69_03555) - 696896..697327 (+) 432 WP_103268623.1 FixH family protein -
  PYH69_RS03560 (PYH69_03560) ceuB 697452..698420 (+) 969 WP_017000362.1 ABC transporter permease Machinery gene
  PYH69_RS03565 (PYH69_03565) - 698413..699378 (+) 966 WP_135021474.1 iron chelate uptake ABC transporter family permease subunit -
  PYH69_RS03570 (PYH69_03570) - 699375..700175 (+) 801 WP_064210867.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35426.02 Da        Isoelectric Point: 10.4592

>NTDB_id=795818 PYH69_RS03560 WP_017000362.1 697452..698420(+) (ceuB) [Mammaliicoccus lentus strain 7048]
MGKFLMRLDVLIVLLVIATFFSIFIGVSEVRPLQILSLTDEQKNILVSSRIPRTVSIIISGSCLAICGLIMQQLTRNKFV
SPTTAGTMDWAKLGVLISLILFPDTNILFKLLFATLLSLFGTMLFMQILQRIQFKDVIFIPLVGIMLGNIVSSFSTFVAL
RTNAVQSIGNFMQGNFSIITSGRYEILYISIPLLIIAYIFANKFTIAGMGKDFSVNLGLNYHRIVNIGLIIASIITALVV
VTVGMMPFLGLIIPNLISIFRGDHLKNALPHTAILGALFVMICDILGRLIIFPYEITIGLTIGVIGSFIFIVLLMKGRSK
NA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=795818 PYH69_RS03560 WP_017000362.1 697452..698420(+) (ceuB) [Mammaliicoccus lentus strain 7048]
ATGGGAAAGTTTTTAATGCGTTTAGATGTATTGATTGTATTATTAGTTATCGCAACATTCTTCTCAATATTTATTGGTGT
TTCAGAAGTGAGACCTTTACAAATATTAAGTCTTACAGATGAACAGAAAAATATACTAGTATCTAGTAGAATTCCTAGAA
CGGTTAGTATTATTATTTCAGGAAGTTGTTTAGCAATATGCGGTCTGATTATGCAACAGTTAACGAGAAATAAATTTGTT
TCTCCAACAACAGCAGGCACGATGGATTGGGCAAAGTTAGGTGTTTTAATTTCACTGATACTATTTCCAGACACGAATAT
ATTATTTAAACTTTTATTCGCAACATTACTAAGTTTATTTGGAACAATGTTATTCATGCAAATCCTACAAAGAATTCAAT
TCAAAGATGTTATTTTTATACCACTTGTAGGGATAATGCTTGGTAACATTGTTTCTAGTTTTTCAACCTTTGTTGCTTTA
AGAACAAACGCTGTTCAAAGCATAGGGAACTTTATGCAAGGTAACTTTTCTATCATTACTAGTGGGAGATACGAAATTTT
ATACATAAGTATTCCTTTATTGATAATTGCGTATATTTTTGCCAACAAATTTACGATTGCAGGTATGGGAAAGGACTTCA
GTGTCAACTTAGGATTAAATTACCATAGAATAGTTAATATTGGTTTAATCATTGCATCTATCATTACAGCACTAGTTGTG
GTAACAGTAGGAATGATGCCTTTCTTAGGGTTAATTATACCGAACTTAATTTCAATATTCAGAGGTGATCATCTTAAAAA
TGCTTTACCGCACACTGCAATCTTAGGCGCGTTGTTTGTTATGATATGCGACATTTTAGGAAGACTGATTATATTCCCAT
ACGAAATTACAATTGGTTTAACAATCGGTGTAATTGGTAGCTTTATTTTCATAGTTTTATTGATGAAAGGACGTTCGAAA
AATGCTTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.473

98.447

0.497