Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   Q8R68_RS18340 Genome accession   NZ_CP132223
Coordinates   3723190..3723630 (+) Length   146 a.a.
NCBI ID   WP_000360904.1    Uniprot ID   P36647
Organism   Escherichia coli strain Jtgc-02-2-Tmex     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3718190..3728630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8R68_RS18320 (Q8R68_18295) aroP 3719188..3720561 (+) 1374 WP_000969915.1 aromatic amino acid transporter AroP -
  Q8R68_RS18325 (Q8R68_18300) ampE 3720604..3721458 (-) 855 WP_000172005.1 beta-lactamase regulator AmpE -
  Q8R68_RS18330 (Q8R68_18305) ampD 3721455..3722006 (-) 552 WP_000923721.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  Q8R68_RS18335 (Q8R68_18310) nadC 3722094..3722987 (+) 894 WP_001135174.1 carboxylating nicotinate-nucleotide diphosphorylase -
  Q8R68_RS18340 (Q8R68_18315) pilA 3723190..3723630 (+) 441 WP_000360904.1 prepilin peptidase-dependent pilin Machinery gene
  Q8R68_RS18345 (Q8R68_18320) pilB 3723640..3725025 (+) 1386 WP_001025145.1 type II secretion system protein GspE Machinery gene
  Q8R68_RS18350 (Q8R68_18325) hofC 3725015..3726217 (+) 1203 WP_000157266.1 protein transport protein HofC -
  Q8R68_RS18355 (Q8R68_18330) guaC 3726252..3727295 (-) 1044 WP_001217338.1 GMP reductase -
  Q8R68_RS18360 (Q8R68_18335) - 3727451..3727495 (-) 45 WP_120795372.1 protein YacM -
  Q8R68_RS18365 (Q8R68_18340) coaE 3727520..3728140 (+) 621 WP_001269520.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15621.75 Da        Isoelectric Point: 4.3938

>NTDB_id=795779 Q8R68_RS18340 WP_000360904.1 3723190..3723630(+) (pilA) [Escherichia coli strain Jtgc-02-2-Tmex]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN

Nucleotide


Download         Length: 441 bp        

>NTDB_id=795779 Q8R68_RS18340 WP_000360904.1 3723190..3723630(+) (pilA) [Escherichia coli strain Jtgc-02-2-Tmex]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P36647

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

43.089

84.247

0.363