Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   Q9L40_RS17660 Genome accession   NZ_CP132190
Coordinates   2719758..2720138 (-) Length   126 a.a.
NCBI ID   WP_000045526.1    Uniprot ID   Q6BBL2
Organism   Vibrio cholerae strain DRC187     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2714758..2725138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS17640 (Q9L40_17640) - 2714911..2716317 (+) 1407 WP_305798749.1 MDR family MFS transporter -
  Q9L40_RS17645 (Q9L40_17645) - 2716473..2717987 (+) 1515 WP_305798748.1 cryptochrome/deoxyribodipyrimidine photo-lyase family protein -
  Q9L40_RS17650 (Q9L40_17650) - 2718143..2718457 (+) 315 WP_000312389.1 multidrug efflux SMR transporter -
  Q9L40_RS17655 (Q9L40_17655) - 2718515..2719750 (-) 1236 WP_113600833.1 methyl-accepting chemotaxis protein -
  Q9L40_RS17660 (Q9L40_17660) pilL-C 2719758..2720138 (-) 381 WP_000045526.1 response regulator Machinery gene
  Q9L40_RS17665 (Q9L40_17665) - 2720131..2720391 (-) 261 WP_119091092.1 hypothetical protein -
  Q9L40_RS17670 (Q9L40_17670) - 2720381..2722654 (-) 2274 WP_305799442.1 chemotaxis protein CheA -
  Q9L40_RS17675 (Q9L40_17675) - 2722663..2723034 (-) 372 WP_032480724.1 PleD family two-component system response regulator -
  Q9L40_RS17680 (Q9L40_17680) - 2723034..2723879 (-) 846 WP_001002153.1 protein-glutamate O-methyltransferase CheR -
  Q9L40_RS17685 (Q9L40_17685) - 2723890..2724546 (-) 657 WP_148524644.1 HEAT repeat domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13674.04 Da        Isoelectric Point: 9.8959

>NTDB_id=795644 Q9L40_RS17660 WP_000045526.1 2719758..2720138(-) (pilL-C) [Vibrio cholerae strain DRC187]
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS

Nucleotide


Download         Length: 381 bp        

>NTDB_id=795644 Q9L40_RS17660 WP_000045526.1 2719758..2720138(-) (pilL-C) [Vibrio cholerae strain DRC187]
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCGGAAACTCGACTCAAAGGTGGTCTTAAGGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACTCCGATT
TTAGTGCTCACGACAGAGCAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCTACAGGTTATTTAGTTAAGCC
AGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6BBL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

39.2

99.206

0.389