Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PYH66_RS12350 Genome accession   NZ_CP118816
Coordinates   2505955..2507325 (-) Length   456 a.a.
NCBI ID   WP_096555020.1    Uniprot ID   A0AAQ0S052
Organism   Staphylococcus delphini strain 7058     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2500955..2512325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH66_RS12325 (PYH66_12200) cysE 2501123..2501788 (-) 666 WP_155262047.1 serine O-acetyltransferase -
  PYH66_RS12330 (PYH66_12205) gltX 2502174..2503628 (-) 1455 WP_096647858.1 glutamate--tRNA ligase -
  PYH66_RS12335 ispF 2503705..2504184 (-) 480 WP_262610668.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  PYH66_RS12340 ispD 2504263..2504874 (-) 612 Protein_2406 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  PYH66_RS12345 (PYH66_12215) - 2504875..2505936 (-) 1062 WP_019166688.1 PIN/TRAM domain-containing protein -
  PYH66_RS12350 (PYH66_12220) radA 2505955..2507325 (-) 1371 WP_096555020.1 DNA repair protein RadA Machinery gene
  PYH66_RS12355 (PYH66_12225) - 2507595..2510054 (-) 2460 WP_019166690.1 ATP-dependent Clp protease ATP-binding subunit -
  PYH66_RS12360 (PYH66_12230) - 2510070..2511074 (-) 1005 WP_019166691.1 protein arginine kinase -
  PYH66_RS12365 (PYH66_12235) - 2511064..2511594 (-) 531 WP_353419388.1 UvrB/UvrC motif-containing protein -
  PYH66_RS12370 (PYH66_12240) - 2511609..2512070 (-) 462 WP_014614779.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49958.45 Da        Isoelectric Point: 7.2142

>NTDB_id=795577 PYH66_RS12350 WP_096555020.1 2505955..2507325(-) (radA) [Staphylococcus delphini strain 7058]
MAKTKTIFECTACGYQSPKWMGKCPNCGAWNSMEESFEQKTASPKHGVRAQKTSSAKIQKLNDIKQELAPRIQTNSGELN
RVLGGGIVEGSLVLIGGDPGIGKSTLLLQMCAALSKEKRVLYITGEESLNQTKIRADRLDEDASQLNVFAETDLMVIHEA
VKKVEPDLIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNVATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKSVLNPSEMFLEERTTNVAGSTIVATMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLSEPAVDLGIVIATASSFKDQAVDGLDCYIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRVIIPKNNIGGWQFPEGIEVIGVTSVNEALKHALKN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=795577 PYH66_RS12350 WP_096555020.1 2505955..2507325(-) (radA) [Staphylococcus delphini strain 7058]
GTGGCAAAAACGAAAACGATTTTTGAATGTACGGCCTGTGGTTACCAATCACCTAAATGGATGGGTAAATGTCCAAATTG
TGGTGCTTGGAATTCAATGGAGGAATCTTTTGAACAAAAAACTGCGAGTCCTAAACACGGTGTAAGGGCGCAAAAGACAA
GTTCGGCTAAAATACAAAAGCTCAATGACATTAAACAAGAGCTTGCGCCACGTATCCAAACGAATAGTGGTGAATTAAAC
CGTGTGCTCGGTGGCGGTATTGTAGAAGGGTCACTCGTGCTGATTGGTGGCGATCCAGGGATAGGGAAGTCGACACTGTT
ACTGCAAATGTGTGCGGCGTTATCTAAAGAAAAAAGAGTACTCTATATTACTGGTGAGGAATCACTCAATCAAACTAAAA
TTAGAGCGGATCGTTTAGATGAAGATGCGAGTCAACTGAACGTATTTGCGGAAACGGACTTAATGGTTATTCATGAAGCG
GTGAAAAAGGTCGAGCCTGATTTGATCGTCGTGGACTCGATTCAAACGATTTATCATCCTGAAATTAGTTCGGCGCCGGG
CTCTGTGTCGCAAGTTCGTGAAAGTACGCAAAGCTTGATGCATATCGCAAAGCAGATGAATGTTGCGACGTTTATTGTAG
GCCATGTGACGAAAGAAGGCCAAATTGCGGGGCCGCGTTTGCTGGAACATATGGTGGATACGGTGCTTTATTTTGAAGGT
GATGAACATCACGCGTATCGTATTTTAAGAGCGGTGAAAAACCGTTTTGGCTCTACGAATGAAATGGGCATTTTTGAAAT
GAAGCAGTCCGGTTTAAAAAGTGTGCTCAATCCGTCAGAAATGTTTTTAGAAGAACGGACGACCAATGTTGCAGGTTCGA
CAATTGTTGCAACGATGGAAGGAACACGACCATTATTGATTGAAGTACAAGCGCTTGTGACACCGACAACGTTCAATAAC
CCGAGACGTATGGCGACAGGTATTGACCATAATCGCCTCAGTTTATTGATGGCGGTGTTAGAGAAAAAAGAAGGGTATTT
ACTACAACAACAAGATGCTTACATTAAAGTAGCAGGGGGCGTCAAACTTTCTGAACCTGCTGTCGACTTAGGTATCGTCA
TTGCGACAGCTTCTAGTTTTAAAGACCAAGCAGTAGACGGCCTCGATTGCTATATTGGCGAGGTTGGATTGACGGGTGAG
GTGCGCCGTGTTTCACGTATTGAGCAACGTGTGCAAGAAGCGGCAAAACTGGGCTTTAAACGCGTAATTATTCCTAAAAA
TAATATTGGCGGATGGCAGTTCCCAGAAGGTATTGAAGTGATTGGCGTGACTTCTGTCAATGAAGCATTGAAACACGCAT
TAAAAAATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)

AAA domain (AAA_25)

(71-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.789

100

0.658
  radA Streptococcus pneumoniae Rx1

58.242

99.781

0.581
  radA Streptococcus pneumoniae D39

58.242

99.781

0.581
  radA Streptococcus pneumoniae R6

58.242

99.781

0.581
  radA Streptococcus pneumoniae TIGR4

58.242

99.781

0.581
  radA Streptococcus mitis NCTC 12261

58.242

99.781

0.581
  radA Streptococcus mitis SK321

58.242

99.781

0.581