Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   Q9L40_RS07105 Genome accession   NZ_CP132190
Coordinates   425914..427944 (-) Length   676 a.a.
NCBI ID   WP_305799321.1    Uniprot ID   -
Organism   Vibrio cholerae strain DRC187     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 420914..432944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS07080 (Q9L40_07080) moaB 421024..421536 (-) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  Q9L40_RS07085 (Q9L40_07085) moaA 421596..422585 (-) 990 WP_305799322.1 GTP 3',8-cyclase MoaA -
  Q9L40_RS07090 (Q9L40_07090) - 422892..423782 (+) 891 WP_000061067.1 YvcK family protein -
  Q9L40_RS07095 (Q9L40_07095) luxU 423771..424112 (-) 342 WP_057643958.1 quorum-sensing phosphorelay protein LuxU -
  Q9L40_RS07100 (Q9L40_07100) luxO 424116..425483 (-) 1368 WP_001888250.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  Q9L40_RS07105 (Q9L40_07105) uvrB 425914..427944 (-) 2031 WP_305799321.1 excinuclease ABC subunit UvrB Machinery gene
  Q9L40_RS07115 (Q9L40_07115) rsxA 428826..429407 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  Q9L40_RS07120 (Q9L40_07120) rsxB 429407..429994 (+) 588 WP_000104484.1 electron transport complex subunit RsxB -
  Q9L40_RS07125 (Q9L40_07125) rsxC 430003..432447 (+) 2445 WP_305799319.1 electron transport complex subunit RsxC -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 76626.46 Da        Isoelectric Point: 5.0342

>NTDB_id=795575 Q9L40_RS07105 WP_305799321.1 425914..427944(-) (uvrB) [Vibrio cholerae strain DRC187]
MSKAFELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAF
FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLH
LRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVITSRDLA
RFTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRIAQRTQFDIEMMNELGFCSGIENYSRYLSGRAEG
EPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVEFGFRLPSALDNRPLKFDEFEVLAPQTIFVSATPSEY
ELTKSGGEVAEQVVRPTGLLDPIIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSD
IDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITK
SMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEIS
KLEAAMYQHAQNLEFELAAQKRDEIHLLRQQFIANS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=795575 Q9L40_RS07105 WP_305799321.1 425914..427944(-) (uvrB) [Vibrio cholerae strain DRC187]
ATGAGCAAAGCATTTGAATTGGTTTCAGACTATCAACCTGCTGGTGATCAGCCTACCGCGATTAAGCAATTGCTGGAGGG
GTTGGAAGCGGGCTTGGCTCATCAAACTCTGCTTGGGGTAACGGGTTCGGGTAAAACCTTTACGTTAGCGAATGTGATTG
CCACCGCGCAGCGTCCCACCATTATACTTGCGCCTAATAAGACACTGGCGGCTCAATTATACGGCGAAATGAAAGCCTTT
TTTCCCAACAATGCGGTGGAGTATTTCGTTTCTTACTACGACTACTATCAACCAGAAGCCTATGTGCCGACTACGGATAC
TTTTATAGAAAAAGACGCGTCCGTGAACGCTCATATTGAACAGATGCGCTTATCGGCCACTAAAGCCTTGCTTGAGCGCA
AAGATGCAGTGATTGTCGCTTCGGTTTCTGCCATCTACGGTCTGGGCGATCCGGATTCTTATCTAAAAATGATGCTCCAT
TTACGTCGTGGTGATGTGATTAATCAACGTGACATGTTGCGTCGTTTGGCGGAGCTGCAATATTCACGCAATGATATGGC
ATTTGAGCGTGGTCAGTTTCGGGTACGCGGAGAAGTGATTGATATTTTCCCTGCCGAATCGGATCAAGAAGCTGTTCGAG
TGGAAATGTTTGATGATGAAGTCGAATGCATCAGCTTATTTGACCCGCTGACCGGCGTGATTACGTCACGCGATTTGGCT
CGGTTTACGATTTACCCCAAAACTCACTATGTCACCCCACGCGAGCGCATTCTTGAGGCCATTGAGCAGATTAAGAGCGA
GTTACAGGTCCGCCGCCAATATCTGCTGGATAACAATAAATTGCTAGAAGAGCAGCGGATTGCTCAGCGAACTCAGTTTG
ATATTGAGATGATGAACGAACTGGGATTCTGCTCTGGGATCGAAAACTACTCACGTTACCTAAGTGGTCGTGCAGAAGGC
GAGCCGCCTCCAACGCTCTTCGATTACTTGCCTCACGATGGCTTGCTGATCATCGATGAATCGCACGTCACTGTGCCGCA
AATTGGCGCGATGTTTAAAGGCGACCGTTCACGCAAAGAAACGCTGGTGGAGTTTGGTTTTCGCCTGCCTTCAGCCTTGG
ATAACCGTCCACTTAAGTTTGATGAATTTGAAGTATTAGCACCGCAAACCATCTTTGTGTCAGCCACACCAAGTGAATAT
GAGCTTACTAAATCGGGTGGTGAGGTGGCGGAGCAAGTGGTGCGTCCAACCGGTTTGTTAGACCCGATCATTGAAGTACG
TCCGGTCGCCACTCAGGTGGATGATCTGCTTTCTGAAGCGCGCATTCGCGCGGCCAATGATGAGCGGATTTTGGTGACGA
CCTTAACCAAACGCATGGCCGAGGACTTAACCGAATATCTGCATGAGCATGGTGTGAAAGTTCGCTATTTACACTCGGAC
ATTGATACCGTCGAACGGGTAGAAATTATTCGTGATTTACGATTAGGCGTATTTGATGTGTTGGTGGGGATCAACTTGCT
ACGTGAAGGTCTGGATATGCCAGAAGTCGCTTTAGTGGCGATTTTGGATGCTGATAAAGAAGGCTTTTTGCGTTCCGAGC
GTTCACTTATCCAGACCATGGGTCGTGCAGCACGTAACGTGAATGGTAAAGCAATTTTGTATGCCGACTCGATCACCAAA
TCCATGCGTAAAGCGATCGATGAAACCGAGCGTCGCCGTGAGAAGCAGCTGGCTTATAATGAGCAGCGCGGTATCACGCC
GCAGCCTTTAAAACGCAGTGTTAAAGACATCATGGAGCTGGGCGATATTGCGAAATCGCGTAAACAGAAGAACAGCAAAG
TGGTGCCATTGGCGAAAGTAGCTGAAGAATCGGCGGCTTACCAAGTGTTGACCCCTCAGCAGCTTGAAAAAGAGATCAGT
AAATTAGAAGCTGCAATGTATCAGCATGCGCAGAACTTAGAGTTTGAGTTAGCGGCGCAAAAACGTGATGAAATTCATCT
GTTGCGTCAGCAGTTTATCGCCAATAGTTAG

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(159-250)

UvrB/uvrC motif (UVR)

(636-671)

Type III restriction enzyme, res subunit (ResIII)

(16-119)

Helicase conserved C-terminal domain (Helicase_C)

(442-545)

Ultra-violet resistance protein B (UvrB)

(553-594)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.539

97.485

0.541
  uvrB Streptococcus pneumoniae R6

55.539

97.485

0.541
  uvrB Streptococcus pneumoniae D39

55.539

97.485

0.541