Detailed information
Bioinformatically predicted
Overview
| Name | ceuB | Type | Machinery gene |
| Locus tag | PYH58_RS12410 | Genome accession | NZ_CP118813 |
| Coordinates | 2467939..2468910 (-) | Length | 323 a.a. |
| NCBI ID | WP_353462742.1 | Uniprot ID | - |
| Organism | Mammaliicoccus sciuri strain 7061 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2469275..2505870 | 2467939..2468910 | flank | 365 |
Gene organization within MGE regions
Location: 2467939..2505870
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PYH58_RS12410 (PYH58_12415) | ceuB | 2467939..2468910 (-) | 972 | WP_353462742.1 | ABC transporter permease | Machinery gene |
| PYH58_RS12415 (PYH58_12420) | - | 2469275..2470924 (+) | 1650 | WP_353462743.1 | IS1182 family transposase | - |
| PYH58_RS12420 (PYH58_12425) | - | 2470953..2471369 (-) | 417 | WP_025905416.1 | FixH family protein | - |
| PYH58_RS12425 (PYH58_12430) | nrdF | 2472110..2473081 (-) | 972 | WP_025905415.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| PYH58_RS12430 (PYH58_12435) | nrdE | 2473110..2475215 (-) | 2106 | WP_353462744.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| PYH58_RS12435 (PYH58_12440) | nrdI | 2475178..2475576 (-) | 399 | WP_353462745.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| PYH58_RS12440 (PYH58_12445) | - | 2475951..2476835 (+) | 885 | WP_107576949.1 | DMT family transporter | - |
| PYH58_RS12445 (PYH58_12450) | queF | 2476835..2477335 (+) | 501 | WP_107576948.1 | preQ(1) synthase | - |
| PYH58_RS12450 (PYH58_12455) | - | 2477630..2479144 (+) | 1515 | WP_353462746.1 | peptide MFS transporter | - |
| PYH58_RS12455 (PYH58_12460) | - | 2479148..2480855 (-) | 1708 | Protein_2430 | IS1182 family transposase | - |
| PYH58_RS12460 (PYH58_12465) | - | 2481242..2482444 (-) | 1203 | WP_353464006.1 | IS110 family transposase | - |
| PYH58_RS12465 (PYH58_12470) | - | 2482714..2483334 (+) | 621 | Protein_2432 | oligopeptide:H+ symporter | - |
| PYH58_RS12470 (PYH58_12475) | - | 2483502..2484083 (-) | 582 | WP_353462747.1 | 5'(3')-deoxyribonucleotidase | - |
| PYH58_RS12475 (PYH58_12480) | hisC | 2484148..2485215 (-) | 1068 | WP_353462748.1 | histidinol-phosphate transaminase | - |
| PYH58_RS12480 (PYH58_12485) | - | 2485318..2486832 (-) | 1515 | WP_262649738.1 | ABC transporter permease/substrate-binding protein | - |
| PYH58_RS12485 (PYH58_12490) | - | 2486829..2487791 (-) | 963 | WP_353462749.1 | ABC transporter ATP-binding protein | - |
| PYH58_RS12490 (PYH58_12495) | recQ | 2487880..2489658 (-) | 1779 | WP_353462750.1 | DNA helicase RecQ | - |
| PYH58_RS12495 (PYH58_12500) | - | 2489681..2491552 (-) | 1872 | WP_353462751.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| PYH58_RS12500 (PYH58_12505) | - | 2491638..2492453 (+) | 816 | WP_103362198.1 | ZIP family metal transporter | - |
| PYH58_RS12505 (PYH58_12510) | ltaS | 2493033..2494973 (-) | 1941 | WP_353462752.1 | polyglycerol-phosphate lipoteichoic acid synthase LtaS | - |
| PYH58_RS12510 (PYH58_12515) | - | 2495174..2496178 (-) | 1005 | WP_353462753.1 | biotin-dependent carboxyltransferase family protein | - |
| PYH58_RS12515 (PYH58_12520) | - | 2496169..2496870 (-) | 702 | WP_353462754.1 | carboxyltransferase domain-containing protein | - |
| PYH58_RS12520 (PYH58_12525) | - | 2496911..2497123 (-) | 213 | WP_262649728.1 | hypothetical protein | - |
| PYH58_RS12525 (PYH58_12530) | - | 2497185..2498933 (-) | 1749 | WP_353462755.1 | bifunctional anthranilate synthase component I family protein/class IV aminotransferase | - |
| PYH58_RS12530 (PYH58_12535) | - | 2498911..2499513 (-) | 603 | WP_353462756.1 | aminodeoxychorismate/anthranilate synthase component II | - |
| PYH58_RS12535 (PYH58_12540) | queC | 2499717..2500385 (+) | 669 | WP_126476678.1 | 7-cyano-7-deazaguanine synthase QueC | - |
| PYH58_RS12540 (PYH58_12545) | queD | 2500385..2500816 (+) | 432 | WP_048539957.1 | 6-carboxytetrahydropterin synthase QueD | - |
| PYH58_RS12545 (PYH58_12550) | queE | 2500809..2501519 (+) | 711 | WP_243552396.1 | 7-carboxy-7-deazaguanine synthase QueE | - |
| PYH58_RS12550 (PYH58_12555) | - | 2501622..2502290 (-) | 669 | WP_353462757.1 | DUF1129 family protein | - |
| PYH58_RS12555 (PYH58_12560) | - | 2502283..2502621 (-) | 339 | WP_262649721.1 | PadR family transcriptional regulator | - |
| PYH58_RS12560 (PYH58_12565) | - | 2502873..2503448 (+) | 576 | WP_224658808.1 | hypothetical protein | - |
| PYH58_RS12565 (PYH58_12570) | - | 2503500..2503748 (+) | 249 | WP_025904751.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| PYH58_RS12570 (PYH58_12575) | - | 2503884..2504957 (-) | 1074 | WP_353462758.1 | IS30 family transposase | - |
| PYH58_RS12575 (PYH58_12580) | - | 2505148..2505870 (-) | 723 | WP_353462759.1 | YwiC-like family protein | - |
Sequence
Protein
Download Length: 323 a.a. Molecular weight: 35446.89 Da Isoelectric Point: 10.7243
>NTDB_id=795509 PYH58_RS12410 WP_353462742.1 2467939..2468910(-) (ceuB) [Mammaliicoccus sciuri strain 7061]
MGKFLMRLDVLIILLVIATFFSIFIGVSEVKPSHILNLTDEQKNILVSSRIPRTVSIIISGSSLAICGLIMQQLTRNKFV
SPTTAGTMDWARLGILISLIAFPEANILLKLLFATLLSLFGTILFMQILRRIQFKDVIFIPLVGIMLGNIVSSFSSFVAL
RTNAVQSIGNFMQGNFSIITSGRYEILYISIPLLILAFIFANQFTIAGMGKDFSLNLGLNYQKVVNIGLIIASIITALVV
VTVGMMPFLGLIIPNLVSIFRGDHLKNALPHTAVFGALFVMICDVIGRLIIFPYEITIGLTIGVIGSFIFIVLLMKGRSR
NAQ
MGKFLMRLDVLIILLVIATFFSIFIGVSEVKPSHILNLTDEQKNILVSSRIPRTVSIIISGSSLAICGLIMQQLTRNKFV
SPTTAGTMDWARLGILISLIAFPEANILLKLLFATLLSLFGTILFMQILRRIQFKDVIFIPLVGIMLGNIVSSFSSFVAL
RTNAVQSIGNFMQGNFSIITSGRYEILYISIPLLILAFIFANQFTIAGMGKDFSLNLGLNYQKVVNIGLIIASIITALVV
VTVGMMPFLGLIIPNLVSIFRGDHLKNALPHTAVFGALFVMICDVIGRLIIFPYEITIGLTIGVIGSFIFIVLLMKGRSR
NAQ
Nucleotide
Download Length: 972 bp
>NTDB_id=795509 PYH58_RS12410 WP_353462742.1 2467939..2468910(-) (ceuB) [Mammaliicoccus sciuri strain 7061]
ATGGGAAAGTTTTTAATGCGTTTAGATGTTTTAATCATATTATTAGTAATTGCAACGTTCTTCTCTATTTTTATAGGTGT
TTCAGAAGTAAAACCTTCACATATATTAAATTTAACTGACGAACAGAAGAATATTTTAGTGTCGAGTAGAATTCCGAGAA
CAGTCAGTATTATTATTTCAGGGAGTTCATTAGCTATTTGTGGACTGATTATGCAACAGTTAACAAGAAATAAATTCGTT
TCTCCAACAACTGCAGGGACAATGGATTGGGCGAGATTAGGTATATTAATTTCTCTTATCGCGTTTCCAGAAGCCAATAT
ACTACTTAAATTATTATTTGCTACATTATTAAGCTTATTTGGAACAATTCTATTTATGCAAATTCTCCGTAGAATTCAAT
TTAAAGATGTTATTTTTATACCGTTAGTTGGTATCATGCTTGGAAACATTGTGTCGAGTTTTTCTTCTTTTGTTGCATTA
CGTACAAATGCTGTACAAAGTATTGGTAATTTTATGCAAGGTAATTTCTCAATTATTACAAGTGGTAGATATGAAATTCT
TTACATTAGTATTCCGTTATTGATTTTAGCGTTTATATTTGCGAATCAATTTACGATTGCTGGTATGGGTAAAGATTTCA
GTTTGAATTTAGGACTTAATTATCAAAAAGTCGTCAATATCGGGCTTATCATTGCATCAATTATTACAGCACTTGTTGTT
GTAACAGTTGGTATGATGCCATTCTTAGGATTAATTATTCCTAACTTAGTTTCAATATTTAGAGGAGATCATTTGAAAAA
TGCATTGCCGCATACAGCAGTATTTGGTGCATTGTTTGTGATGATTTGTGATGTCATTGGAAGATTAATTATATTCCCTT
ATGAAATTACTATTGGTTTAACAATTGGTGTAATTGGTAGTTTCATATTTATAGTATTGCTGATGAAAGGACGTTCTAGA
AATGCTCAATAA
ATGGGAAAGTTTTTAATGCGTTTAGATGTTTTAATCATATTATTAGTAATTGCAACGTTCTTCTCTATTTTTATAGGTGT
TTCAGAAGTAAAACCTTCACATATATTAAATTTAACTGACGAACAGAAGAATATTTTAGTGTCGAGTAGAATTCCGAGAA
CAGTCAGTATTATTATTTCAGGGAGTTCATTAGCTATTTGTGGACTGATTATGCAACAGTTAACAAGAAATAAATTCGTT
TCTCCAACAACTGCAGGGACAATGGATTGGGCGAGATTAGGTATATTAATTTCTCTTATCGCGTTTCCAGAAGCCAATAT
ACTACTTAAATTATTATTTGCTACATTATTAAGCTTATTTGGAACAATTCTATTTATGCAAATTCTCCGTAGAATTCAAT
TTAAAGATGTTATTTTTATACCGTTAGTTGGTATCATGCTTGGAAACATTGTGTCGAGTTTTTCTTCTTTTGTTGCATTA
CGTACAAATGCTGTACAAAGTATTGGTAATTTTATGCAAGGTAATTTCTCAATTATTACAAGTGGTAGATATGAAATTCT
TTACATTAGTATTCCGTTATTGATTTTAGCGTTTATATTTGCGAATCAATTTACGATTGCTGGTATGGGTAAAGATTTCA
GTTTGAATTTAGGACTTAATTATCAAAAAGTCGTCAATATCGGGCTTATCATTGCATCAATTATTACAGCACTTGTTGTT
GTAACAGTTGGTATGATGCCATTCTTAGGATTAATTATTCCTAACTTAGTTTCAATATTTAGAGGAGATCATTTGAAAAA
TGCATTGCCGCATACAGCAGTATTTGGTGCATTGTTTGTGATGATTTGTGATGTCATTGGAAGATTAATTATATTCCCTT
ATGAAATTACTATTGGTTTAACAATTGGTGTAATTGGTAGTTTCATATTTATAGTATTGCTGATGAAAGGACGTTCTAGA
AATGCTCAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ceuB | Campylobacter jejuni subsp. jejuni 81-176 |
51.42 |
98.142 |
0.505 |