Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   Q9L39_RS17920 Genome accession   NZ_CP132183
Coordinates   810078..811016 (-) Length   312 a.a.
NCBI ID   WP_000735136.1    Uniprot ID   Q9KMU1
Organism   Vibrio cholerae strain DRC072     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 805078..816016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L39_RS17900 (Q9L39_17900) vctA 805243..807222 (-) 1980 WP_000350325.1 TonB-dependent iron chelate receptor VctA -
  Q9L39_RS17905 (Q9L39_17905) - 807309..808325 (+) 1017 WP_001181423.1 AraC family transcriptional regulator -
  Q9L39_RS17910 (Q9L39_17910) vctC 808371..809135 (-) 765 WP_000615308.1 iron chelate ABC transporter ATP-binding protein VctC -
  Q9L39_RS17915 (Q9L39_17915) vctG 809138..810088 (-) 951 WP_001154099.1 iron chelate uptake ABC transporter permease subunit VctG -
  Q9L39_RS17920 (Q9L39_17920) ceuB 810078..811016 (-) 939 WP_000735136.1 iron chelate uptake ABC transporter permease subunit VctD Machinery gene
  Q9L39_RS17925 (Q9L39_17925) vctP 811069..811980 (-) 912 WP_000842240.1 iron chelate ABC transporter substrate-binding protein VctP -
  Q9L39_RS17930 (Q9L39_17930) - 812782..813054 (+) 273 WP_001259471.1 hypothetical protein -
  Q9L39_RS17935 (Q9L39_17935) prtV 813139..815895 (+) 2757 WP_000848953.1 M6 family metalloprotease PrtV -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 33812.57 Da        Isoelectric Point: 9.4866

>NTDB_id=795469 Q9L39_RS17920 WP_000735136.1 810078..811016(-) (ceuB) [Vibrio cholerae strain DRC072]
MKKLLLVLVVISFCSLFVGVGNLSLAALFQGDESAWQLLLTSRVPRLLAILLSGAGLSIAGLIMQQVSQNRFASPSTSGT
IECAMLGYVLSLVLFGHGQNLWLIFGVSMLGTLVFVFFIQRIQFKNVIFVPLIGIIFGNVIDSLATFIAYKYDAIQNLSG
WAVANFANLLKGDFELLYIAIPVAIFSYLYAARISAVGMGKDFATNLGLNYQQVMIIGVALVSIMSATVVMIVGQLPFLG
LIVPNLVSLYYGDNLRKNIPRTAIFGAMFVLLCDLVGRVIIFPYEVPISMIISILGGSVFIALILRGQRHAG

Nucleotide


Download         Length: 939 bp        

>NTDB_id=795469 Q9L39_RS17920 WP_000735136.1 810078..811016(-) (ceuB) [Vibrio cholerae strain DRC072]
TTGAAAAAGTTATTGCTTGTTTTAGTTGTTATTAGTTTTTGTTCCCTGTTTGTTGGCGTGGGCAATTTATCCCTCGCAGC
CTTGTTTCAAGGTGATGAGTCAGCTTGGCAGTTACTGCTGACTAGCCGAGTCCCCCGATTATTAGCGATTTTGCTCTCCG
GTGCGGGTTTAAGCATCGCGGGTCTTATCATGCAGCAAGTGAGTCAAAACCGATTTGCCTCACCATCGACTTCCGGCACG
ATTGAGTGTGCCATGCTCGGTTACGTGCTTAGCCTAGTTCTGTTTGGCCATGGTCAAAACCTCTGGTTGATTTTCGGCGT
CTCCATGTTGGGTACGCTGGTCTTTGTGTTTTTCATTCAGCGCATTCAGTTTAAAAACGTCATTTTCGTGCCGCTGATCG
GCATCATTTTTGGCAATGTGATTGACTCTTTGGCGACCTTTATTGCCTACAAATATGATGCTATCCAAAATCTTTCCGGT
TGGGCTGTTGCCAATTTTGCCAACCTGCTTAAAGGGGATTTTGAACTGCTCTATATCGCAATCCCAGTGGCTATTTTCAG
CTATTTGTACGCCGCACGCATTTCTGCCGTGGGGATGGGAAAAGATTTTGCGACCAATCTGGGTTTGAATTATCAACAGG
TCATGATCATCGGTGTGGCCTTAGTCTCCATCATGTCGGCGACCGTGGTCATGATTGTCGGTCAACTGCCTTTCTTGGGT
TTGATTGTGCCTAATCTAGTCAGCCTCTATTACGGCGATAATTTGCGTAAAAATATTCCGCGCACTGCCATTTTCGGGGC
GATGTTCGTGTTGTTATGTGATTTAGTGGGGCGCGTCATCATCTTCCCGTATGAAGTCCCCATCTCTATGATCATCAGTA
TTTTAGGTGGTTCGGTGTTTATTGCCTTGATTTTGCGAGGGCAGCGTCATGCAGGATAG

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(8-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KMU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

43.81

100

0.442