Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   Q9L38_RS12130 Genome accession   NZ_CP132180
Coordinates   2685659..2687122 (+) Length   487 a.a.
NCBI ID   WP_000804830.1    Uniprot ID   Q9KP49
Organism   Vibrio cholerae strain DRC193A     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2680659..2692122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L38_RS12100 (Q9L38_12100) - 2681291..2682253 (+) 963 WP_000904330.1 calcium/sodium antiporter -
  Q9L38_RS12105 (Q9L38_12105) kdsD 2682309..2683283 (+) 975 WP_001120614.1 arabinose-5-phosphate isomerase KdsD -
  Q9L38_RS12110 (Q9L38_12110) kdsC 2683283..2683840 (+) 558 WP_000099768.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  Q9L38_RS12115 (Q9L38_12115) lptC 2683837..2684400 (+) 564 WP_000059348.1 LPS export ABC transporter periplasmic protein LptC -
  Q9L38_RS12120 (Q9L38_12120) lptA 2684381..2684875 (+) 495 WP_000830444.1 lipopolysaccharide transport periplasmic protein LptA -
  Q9L38_RS12125 (Q9L38_12125) lptB 2684878..2685603 (+) 726 WP_000996178.1 LPS export ABC transporter ATP-binding protein -
  Q9L38_RS12130 (Q9L38_12130) rpoN/rpoN1 2685659..2687122 (+) 1464 WP_000804830.1 RNA polymerase factor sigma-54 Machinery gene
  Q9L38_RS12135 (Q9L38_12135) hpf 2687147..2687434 (+) 288 WP_001166643.1 ribosome hibernation promoting factor -
  Q9L38_RS12140 (Q9L38_12140) ptsN 2687437..2687883 (+) 447 WP_001177163.1 PTS IIA-like nitrogen regulatory protein PtsN -
  Q9L38_RS12145 (Q9L38_12145) rapZ 2687896..2688756 (+) 861 WP_001237199.1 RNase adapter RapZ -
  Q9L38_RS12150 (Q9L38_12150) - 2688765..2689043 (+) 279 WP_001135899.1 HPr family phosphocarrier protein -
  Q9L38_RS12155 (Q9L38_12155) mgtE 2689204..2690565 (+) 1362 WP_000840452.1 magnesium transporter -
  Q9L38_RS12160 (Q9L38_12160) pmbA 2690637..2691980 (-) 1344 WP_000382645.1 metalloprotease PmbA -

Sequence

Protein


Download         Length: 487 a.a.        Molecular weight: 55438.47 Da        Isoelectric Point: 4.2824

>NTDB_id=795437 Q9L38_RS12130 WP_000804830.1 2685659..2687122(+) (rpoN/rpoN1) [Vibrio cholerae strain DRC193A]
MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLDSVRMTEESPREPEELYEPEP
QDSSDLIEKSEISAELEMDTTWDEVYSANTGSTGLALDDDAPIYQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAI
DDYGYLTVSLEEIQESLRSDDIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWLEEARLLLSQYIDDLG
NRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVIPDVSVYKEQGRWLVTINPDSVPKLKINQQYADLMR
GNNAESNYIRTNLQEAKWLIKSLESRNETLLKVAKCIVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYM
HTPRGIFELKYFFSSHVSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARRTIAKYRESLGIAPS
SQRKRLL

Nucleotide


Download         Length: 1464 bp        

>NTDB_id=795437 Q9L38_RS12130 WP_000804830.1 2685659..2687122(+) (rpoN/rpoN1) [Vibrio cholerae strain DRC193A]
ATGAAACCGTCATTACAGCTCAAGCTAGGTCAACAGTTAGCCATGACTCCGCAGCTCCAGCAGGCGATTCGTCTGTTGCA
GCTTTCGACGCTGGATCTGCAGCAAGAAATTCAGGAAGCATTGGAATCTAACCCCTTGTTAGAGGTGGAAGAGAACCAAG
ACGAAGCGCCATCGCTTGATAGCGTACGTATGACGGAAGAAAGCCCGCGCGAGCCAGAAGAACTCTACGAACCTGAACCG
CAGGATAGCTCGGATCTGATTGAAAAATCGGAAATCAGCGCTGAATTAGAGATGGATACCACTTGGGATGAAGTCTACAG
CGCCAATACTGGCAGTACAGGACTGGCACTCGATGATGATGCCCCTATCTACCAAGGCGAAACCACCCAAACCCTGCAAG
ATTATCTTCACTGGCAACTCGACTTAACTCCCTTTAGCGATGTGGATCGCACTATAGCCGTCGCACTTATCGATGCTATC
GACGATTACGGTTATTTAACCGTCTCACTAGAGGAGATCCAAGAGAGCCTGCGCAGTGATGACATTGAGTTGGATGAGAT
TGAAGCGGTACGTAAACGCATTCAGCAGTTTGACCCCTTTGGTGTGGCATCGCTTAATCTGCAAGACTGCTTGTTGCTGC
AACTCACCACCTATCCCTGTGATACTCCTTGGCTGGAAGAAGCGCGTTTACTGCTCTCACAGTACATCGATGATTTAGGG
AATCGCGATTACAAAACCATTCTGAAAGAGACTAAGCTCAAAGAAGAGGACTTGCGCGAGATCCTGCAACTCATCCAACA
GCTCGATCCTCGCCCCGGCAGTCGAATTGCCCAAGATCACGCTGAATACGTCATACCTGACGTGTCAGTCTATAAAGAAC
AAGGTCGATGGCTGGTCACCATCAACCCAGATAGTGTGCCTAAACTGAAGATCAATCAGCAGTATGCCGACCTGATGCGC
GGTAATAATGCGGAGAGCAACTACATCCGTACCAATTTGCAAGAGGCAAAATGGCTGATCAAAAGTTTAGAAAGTAGAAA
CGAGACACTGCTCAAAGTTGCCAAGTGCATAGTTGAACACCAACACGATTTCTTCGAGTATGGAGAAGAGGCGATGAAGC
CGATGGTGCTCAACGATGTGGCGATGGCGGTGGAAATGCATGAATCGACAATTTCGCGTGTCACCACGCAGAAATACATG
CATACCCCGCGCGGCATTTTTGAGTTGAAGTACTTTTTCTCCAGCCACGTCAGTACTGACAATGGCGGAGAGTGCTCGTC
CACTGCGATCAGGGCGCTGATCAAAAAACTGGTGGCGGCAGAGAATCCTGCCAAACCACTCAGTGACAGCAAGATCGCAA
CCCTACTCGCTGACCAAGGCATCCAAGTCGCGCGGCGAACCATCGCCAAATACCGTGAATCACTTGGCATCGCCCCATCA
AGTCAGCGCAAACGCCTGCTATAG

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-49)

Sigma-54, DNA binding domain (Sigma54_DBD)

(327-485)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(128-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KP49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

44.533

100

0.46