Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   PYH68_RS04630 Genome accession   NZ_CP118807
Coordinates   1010852..1011568 (-) Length   238 a.a.
NCBI ID   WP_029378924.1    Uniprot ID   A0A418I5B6
Organism   Staphylococcus xylosus strain 7064     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1005852..1016568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH68_RS04610 (PYH68_04600) - 1006517..1006741 (+) 225 WP_042362355.1 sulfurtransferase TusA family protein -
  PYH68_RS04615 (PYH68_04605) - 1007324..1008286 (+) 963 WP_119558506.1 LacI family DNA-binding transcriptional regulator -
  PYH68_RS04620 (PYH68_04610) - 1008370..1009854 (+) 1485 WP_119610492.1 sucrose-6-phosphate hydrolase -
  PYH68_RS04625 (PYH68_04615) - 1009851..1010816 (+) 966 WP_107542975.1 carbohydrate kinase -
  PYH68_RS04630 (PYH68_04620) agrA 1010852..1011568 (-) 717 WP_029378924.1 quorum-sensing response regulator AgrA Regulator
  PYH68_RS04635 (PYH68_04625) agrC 1011581..1012876 (-) 1296 WP_353423567.1 quorum-sensing sensor histidine kinase AgrC -
  PYH68_RS04640 (PYH68_04630) agrD 1012902..1013039 (-) 138 WP_029378926.1 cyclic lactone autoinducer peptide AgrD -
  PYH68_RS04645 (PYH68_04635) - 1013042..1013611 (-) 570 WP_047172117.1 accessory gene regulator AgrB -
  PYH68_RS04650 (PYH68_04640) - 1014377..1015162 (-) 786 WP_042362362.1 carbon-nitrogen family hydrolase -
  PYH68_RS04655 (PYH68_04645) - 1015526..1016155 (-) 630 WP_042362363.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27939.77 Da        Isoelectric Point: 5.4095

>NTDB_id=795378 PYH68_RS04630 WP_029378924.1 1010852..1011568(-) (agrA) [Staphylococcus xylosus strain 7064]
MKIFICEDDERQREHMVSIINNYIMIEEKPMEIEVATADPYDILERSKNINDIGCYFLDIQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRVIDCLETSESRLKLLSKESSVETIELKRGSNSIYVQYDDVM
FFESSSKSHRLIAHLDNRQIEFYGNLKEIDQLDKRFFRCHNSFVVNRHNIESIDSKSRVVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=795378 PYH68_RS04630 WP_029378924.1 1010852..1011568(-) (agrA) [Staphylococcus xylosus strain 7064]
GTGAAAATATTCATTTGTGAAGATGATGAAAGACAACGTGAACATATGGTTTCAATTATAAATAACTATATTATGATTGA
AGAAAAACCAATGGAAATTGAAGTTGCGACAGCTGATCCTTATGACATTTTAGAACGCTCAAAGAACATTAATGATATAG
GATGTTACTTTTTAGATATTCAACTAGAAGCTGACATCAACGGTATCAAGCTTGCAAGTGAAATACGTAAACATGATCCG
GTCGGCAATATCATTTTTGTTACAAGTCATAGTGAACTGACATACTTAACATTTGTCTACAAGGTTGCAGCAATGGATTT
CATTTTCAAAGATGATCCAGACGAATTAAAATCAAGAGTGATTGATTGCTTAGAAACATCTGAGTCACGACTAAAACTAC
TTTCAAAAGAAAGCAGCGTCGAAACAATAGAATTAAAACGTGGTAGCAATTCTATTTATGTACAATATGACGATGTGATG
TTCTTCGAATCATCTAGTAAATCCCATCGCTTAATCGCACATCTCGATAATCGTCAAATCGAATTTTATGGAAACCTTAA
AGAAATTGATCAGTTAGATAAACGCTTCTTTAGATGTCATAATAGCTTTGTAGTAAATAGACACAATATTGAGTCCATCG
ACTCTAAATCACGTGTAGTTTATTTTAAAAACAATGAACATTGTTATGCTTCTGTAAGAAATGTTAAAAAGATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A418I5B6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

84.874

100

0.849