Detailed information NTG0795373

Bioinformatically predicted

Overview

• Name: ccrB
• Type: Machinery gene
• Locus tag: PYH68_RS00160
• Genome accession: NZ_CP118807
• Coordinates: 37765..39393 (-)
• Length: 542 a.a.
• NCBI ID: WP_353423187.1
• Uniprot ID: -
• Organism: Staphylococcus xylosus strain 7064
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	39414..40760	37765..39393	flank	21

Gene organization within MGE regions

Location: 37765..40760

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PYH68_RS00160 (PYH68_00160)	ccrB	37765..39393 (-)	1629	WP_353423187.1	recombinase family protein	Machinery gene

Sequence

Protein

• Length: 542 a.a.
• Molecular weight: 62731.53 Da
• Isoelectric Point: 9.5660

>NTDB_id=795373 PYH68_RS00160 WP_353423187.1 37765..39393(-) (ccrB) [Staphylococcus xylosus strain 7064]
MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIKEYCNFHHFEVKDIYADRGISGKSMNRPELQRMLHDANEGLIDCVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
FPLGYDKIPDNKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSINSITYILVNPFYIGKIQFAK
YKDWNEKRRKGLNDKPIIADGKHPPIISQELWDKVQSRKKQVSQKPQVHGKGTNLLTGIIHCPECGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVVERVNQDNQVDVAGLNHDIAYKQQQFY
EINTKLKNLIQTSEDNPDLTSALKPTIHQYETQLNDITNQINQLKQQHNLEKPSYDTKQIAALLQRIFQNIESMDKSQLK
ALYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNNNNLDEVLLSTSSLFLPQTLYFQI

Nucleotide

• Length: 1629 bp

>NTDB_id=795373 PYH68_RS00160 WP_353423187.1 37765..39393(-) (ccrB) [Staphylococcus xylosus strain 7064]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTTCGTGTATCAACGGAAATCCAAAGTACTGAAGGCTATAGTAT
CGATGGACAAATCAATCAAATCAAAGAATATTGTAACTTTCATCATTTCGAGGTCAAAGATATATACGCCGATCGTGGTA
TATCAGGAAAGTCTATGAACCGTCCTGAACTTCAACGTATGTTACATGATGCAAATGAAGGTCTCATCGATTGTGTCATG
GTATATAAAACAAATCGACTCGCACGTAATACATCAGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAACGTATGGAAGTCAATACTTCTTCTGGTAAGCTCATGTTACAAATACTTGCGAGCTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAATGTATTCATGGGCCAAACCAGACGTGCACAAGAAGGCTACTATCAAGGGAAT
TTTCCACTAGGATATGACAAAATACCTGATAATAAACACGAACTGATGATTAATCAACATGAAGCGAATATCGTGAAATA
TATATTCGAATCTTATGCCAAAGGACATGGTTATCGTAAAATAGCCAATGCCCTCAATCACAAAGGATATGTTACTAAAA
AAGGTAATCCTTTTAGCATCAATTCAATAACCTATATCTTAGTCAATCCATTCTACATTGGTAAAATTCAATTTGCGAAG
TACAAAGATTGGAATGAAAAGCGTCGTAAAGGACTGAATGATAAACCTATTATAGCTGATGGTAAACACCCTCCTATTAT
TAGTCAAGAATTATGGGATAAAGTCCAATCACGCAAAAAACAGGTCAGTCAAAAACCTCAAGTTCATGGAAAAGGAACCA
ATCTATTAACAGGTATTATTCACTGCCCAGAATGTGGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAGAT
GGTACCAAGAAGCGAATACGCTATTATTCTTGTAGTAACTTCCGAAACAAAGGTTCAAAGGTATGTTCTGCGAATAGTGT
TAGAGCTGATGTGATTGAAAAATACGTCATGGATCAAATACTTGAAATTGTCAAAAGCGATAAAGTTCTCAAACAAGTTG
TCGAACGTGTTAATCAAGATAATCAAGTCGATGTAGCTGGACTCAATCATGATATTGCCTATAAGCAACAACAATTTTAT
GAAATAAACACTAAACTAAAAAATCTAATTCAAACCAGCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTGAATGACATTACGAATCAAATTAATCAACTCAAGCAGCAACATAATCTAGAGAAACCAT
CTTATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAACTCAAG
GCATTATACCTTACGGTCATTGACCGTATTGACATTCGTAAAGATGAGAATCATAAAAAGCAATTCTACGTTACACTAAA
ACTTAATAATGAAATTATTAAACAACTTTTCAATAATAATAATCTAGACGAAGTGCTCCTCAGCACTTCGTCTTTGTTTT
TGCCTCAAACACTCTACTTTCAAATCTAA

Domains

Predicted by InterproScan.

• Recombinase (Recombinase) (180-280)

• Resolvase, N terminal domain (Resolvase) (11-156)

• Ogr/Delta-like zinc finger (Ogr_Delta) (301-356)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrB	Staphylococcus aureus N315	86.347	100	0.863