Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PYH60_RS10425 Genome accession   NZ_CP118800
Coordinates   2074708..2075676 (-) Length   322 a.a.
NCBI ID   WP_017000362.1    Uniprot ID   A0AAX3W5Q2
Organism   Mammaliicoccus lentus strain 7066     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2069708..2080676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH60_RS10400 (PYH60_10400) - 2070125..2070646 (+) 522 WP_282821359.1 GrpB family protein -
  PYH60_RS10405 (PYH60_10405) murB 2070717..2071646 (+) 930 WP_064210869.1 UDP-N-acetylmuramate dehydrogenase -
  PYH60_RS10410 (PYH60_10410) - 2071809..2072849 (-) 1041 WP_278759465.1 ABC transporter substrate-binding protein -
  PYH60_RS10415 (PYH60_10415) - 2072953..2073753 (-) 801 WP_103268622.1 ATP-binding cassette domain-containing protein -
  PYH60_RS10420 (PYH60_10420) - 2073750..2074715 (-) 966 WP_017000361.1 iron chelate uptake ABC transporter family permease subunit -
  PYH60_RS10425 (PYH60_10425) ceuB 2074708..2075676 (-) 969 WP_017000362.1 ABC transporter permease Machinery gene
  PYH60_RS10430 (PYH60_10430) - 2075801..2076232 (-) 432 WP_103268623.1 FixH family protein -
  PYH60_RS10435 (PYH60_10435) nrdF 2076486..2077457 (-) 972 WP_064204699.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  PYH60_RS10440 (PYH60_10440) nrdE 2077485..2079590 (-) 2106 WP_017000365.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  PYH60_RS10445 (PYH60_10445) nrdI 2079562..2079951 (-) 390 WP_103268625.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35426.02 Da        Isoelectric Point: 10.4592

>NTDB_id=795363 PYH60_RS10425 WP_017000362.1 2074708..2075676(-) (ceuB) [Mammaliicoccus lentus strain 7066]
MGKFLMRLDVLIVLLVIATFFSIFIGVSEVRPLQILSLTDEQKNILVSSRIPRTVSIIISGSCLAICGLIMQQLTRNKFV
SPTTAGTMDWAKLGVLISLILFPDTNILFKLLFATLLSLFGTMLFMQILQRIQFKDVIFIPLVGIMLGNIVSSFSTFVAL
RTNAVQSIGNFMQGNFSIITSGRYEILYISIPLLIIAYIFANKFTIAGMGKDFSVNLGLNYHRIVNIGLIIASIITALVV
VTVGMMPFLGLIIPNLISIFRGDHLKNALPHTAILGALFVMICDILGRLIIFPYEITIGLTIGVIGSFIFIVLLMKGRSK
NA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=795363 PYH60_RS10425 WP_017000362.1 2074708..2075676(-) (ceuB) [Mammaliicoccus lentus strain 7066]
ATGGGAAAGTTTTTAATGCGTTTAGATGTATTGATTGTATTATTAGTTATCGCAACATTCTTCTCAATATTTATTGGTGT
TTCAGAAGTGAGACCTTTACAAATATTAAGTCTTACAGATGAACAGAAAAATATACTAGTATCTAGTAGAATTCCTAGAA
CGGTTAGTATTATTATTTCAGGAAGTTGTTTAGCAATATGCGGTCTGATTATGCAACAGTTAACGAGAAATAAATTTGTT
TCTCCAACAACAGCAGGCACGATGGATTGGGCAAAGTTAGGTGTTTTAATTTCACTGATACTATTTCCAGACACGAATAT
ATTATTTAAACTTTTATTCGCAACATTACTAAGTTTATTTGGAACAATGTTATTCATGCAAATCCTACAAAGAATTCAAT
TCAAAGATGTTATTTTTATACCACTTGTAGGGATAATGCTTGGTAACATTGTTTCTAGTTTTTCAACCTTTGTTGCTTTA
AGAACAAACGCTGTTCAAAGCATAGGGAACTTTATGCAAGGTAACTTTTCTATCATTACTAGTGGGAGATACGAAATTTT
ATACATAAGTATTCCTTTATTGATAATTGCGTATATTTTTGCCAACAAATTTACGATTGCAGGTATGGGAAAGGACTTCA
GTGTCAACTTAGGATTAAATTACCATAGAATAGTTAATATTGGTTTAATCATTGCATCTATCATTACAGCACTAGTTGTG
GTAACAGTAGGAATGATGCCTTTCTTAGGGTTAATTATACCGAACTTAATTTCAATATTCAGAGGTGATCATCTTAAAAA
TGCTTTACCGCACACTGCAATCTTAGGCGCGTTGTTTGTTATGATATGCGACATTTTAGGAAGACTGATTATATTCCCAT
ACGAAATTACAATTGGTTTAACAATCGGTGTAATTGGTAGCTTTATTTTCATAGTTTTATTGATGAAAGGACGTTCGAAA
AATGCTTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.473

98.447

0.497