Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   PYH52_RS04230 Genome accession   NZ_CP118794
Coordinates   875265..875981 (-) Length   238 a.a.
NCBI ID   WP_002466277.1    Uniprot ID   -
Organism   Staphylococcus warneri strain 7067     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 870265..880981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH52_RS04210 (PYH52_04210) - 871153..871377 (+) 225 WP_002466256.1 sulfurtransferase TusA family protein -
  PYH52_RS04215 (PYH52_04215) - 871518..872468 (+) 951 WP_002466257.1 LacI family DNA-binding transcriptional regulator -
  PYH52_RS04220 (PYH52_04220) - 872769..874253 (+) 1485 WP_002466269.1 sucrose-6-phosphate hydrolase -
  PYH52_RS04225 (PYH52_04225) - 874250..875206 (+) 957 WP_002466260.1 carbohydrate kinase -
  PYH52_RS04230 (PYH52_04230) agrA 875265..875981 (-) 717 WP_002466277.1 quorum-sensing response regulator AgrA Regulator
  PYH52_RS04235 (PYH52_04235) agrC 875994..877283 (-) 1290 WP_002466247.1 quorum-sensing sensor histidine kinase AgrC -
  PYH52_RS04240 (PYH52_04240) agrD 877313..877453 (-) 141 WP_002466272.1 cyclic lactone autoinducer peptide AgrD -
  PYH52_RS04245 (PYH52_04245) - 877458..878021 (-) 564 WP_002466262.1 accessory gene regulator AgrB -
  PYH52_RS04250 (PYH52_04250) - 878338..878415 (+) 78 WP_015364840.1 delta-lysin family phenol-soluble modulin -
  PYH52_RS04255 (PYH52_04255) - 878482..878559 (+) 78 WP_015364841.1 delta-lysin family phenol-soluble modulin -
  PYH52_RS04260 (PYH52_04260) - 878973..879758 (-) 786 WP_002466274.1 carbon-nitrogen family hydrolase -
  PYH52_RS04265 (PYH52_04265) - 879875..880501 (-) 627 WP_002466261.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27897.92 Da        Isoelectric Point: 5.9175

>NTDB_id=795314 PYH52_RS04230 WP_002466277.1 875265..875981(-) (agrA) [Staphylococcus warneri strain 7067]
MKIFICEDDPKQRENMASIIKNYIMIEEKPMELALATDDPYEVLEQSKNMNDIGCYFLDIQLEADINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELKTRIIDCLETAHTRLKLLSKESNVETIELKRGSNSVYVQYDDIM
FFESSSKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVINRRNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=795314 PYH52_RS04230 WP_002466277.1 875265..875981(-) (agrA) [Staphylococcus warneri strain 7067]
ATGAAAATATTCATTTGCGAAGATGATCCAAAACAACGAGAAAATATGGCTTCAATTATTAAAAATTATATTATGATTGA
GGAAAAGCCTATGGAGCTTGCTCTCGCAACTGATGATCCTTATGAAGTGCTTGAGCAATCCAAAAATATGAATGACATCG
GTTGTTATTTCTTAGATATTCAACTTGAAGCTGATATAAATGGTATTAAATTAGGTAGTGAAATTCGAAAACATGATCCT
GTAGGTAATATCATTTTTGTAACAAGTCATAGTGAATTAACGTATCTCACTTTCGTTTATAAAGTGGCTGCAATGGATTT
TATATTCAAAGATGATCCTGCAGAACTGAAAACACGTATTATCGATTGTTTAGAAACAGCTCACACAAGACTTAAATTAT
TATCTAAAGAAAGTAATGTAGAAACAATAGAGTTAAAGCGTGGTAGTAATTCAGTTTATGTACAATATGACGATATTATG
TTTTTCGAATCATCTAGTAAATCACATCGTTTAATTGCACATTTAGATAATAGACAAATCGAATTTTATGGTAACCTTAA
AGAATTAAGTCAATTAGATGACCGTTTCTTTAGATGTCATAATAGCTTTGTGATTAACCGAAGAAATATTGAGTCAATTG
ATTCTAAAGAACGCATTGTCTATTTTAAAAATAAAGAGCATTGTTATGCATCAGTTCGTAATGTCAAAAAGATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

93.697

100

0.937