Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PYH70_RS10545 Genome accession   NZ_CP118789
Coordinates   2174407..2175771 (-) Length   454 a.a.
NCBI ID   WP_353422362.1    Uniprot ID   -
Organism   Staphylococcus warneri strain 7068     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2169407..2180771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH70_RS10530 (PYH70_10535) cysE 2170543..2171172 (-) 630 WP_171001928.1 serine O-acetyltransferase -
  PYH70_RS10535 (PYH70_10540) gltX 2171567..2173021 (-) 1455 WP_002465549.1 glutamate--tRNA ligase -
  PYH70_RS10540 (PYH70_10545) - 2173307..2174380 (-) 1074 WP_002465562.1 PIN/TRAM domain-containing protein -
  PYH70_RS10545 (PYH70_10550) radA 2174407..2175771 (-) 1365 WP_353422362.1 DNA repair protein RadA Machinery gene
  PYH70_RS10550 (PYH70_10555) - 2176113..2178566 (-) 2454 WP_002465575.1 ATP-dependent Clp protease ATP-binding subunit -
  PYH70_RS10555 (PYH70_10560) - 2178582..2179586 (-) 1005 WP_002465569.1 protein arginine kinase -
  PYH70_RS10560 (PYH70_10565) - 2179579..2180136 (-) 558 WP_002465548.1 UvrB/UvrC motif-containing protein -
  PYH70_RS10565 (PYH70_10570) - 2180157..2180618 (-) 462 WP_002451197.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49823.30 Da        Isoelectric Point: 6.8989

>NTDB_id=795302 PYH70_RS10545 WP_353422362.1 2174407..2175771(-) (radA) [Staphylococcus warneri strain 7068]
MAKKKIIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKSKETAGKVQTLDSIKNESTPRVLTESKEFNRV
LGGGIVNGSLVLIGGDPGIGKSTLLLQICASLSQSKNVLYITGEESINQTKLRADRLEEDSSKLQVLAETDLEVIYQTVK
DVNPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVLNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSIIVATASSFKDKAVDGLDCFIGEVGLTGEVR
RVARIEQRVQEAAKLGFKRVIIPQTNIGGWTFPEDIKVVGVSSVHEALKYAFNS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=795302 PYH70_RS10545 WP_353422362.1 2174407..2175771(-) (radA) [Staphylococcus warneri strain 7068]
TTGGCCAAGAAAAAGATAATATTTGAATGTATGGCATGTGGCTATCAATCTCCAAAATGGATGGGAAAGTGTCCTAATTG
TGGTGCATGGAACCAGATGGAAGAAATAGTAGAAAAAGCTGCCAATCCTAAACATGGTGTTAAATCTAAAGAAACAGCAG
GGAAAGTACAAACATTAGATAGTATCAAAAATGAATCTACACCACGCGTTCTTACAGAATCTAAAGAATTTAACCGTGTA
CTAGGTGGAGGAATAGTTAATGGATCATTAGTATTAATAGGCGGAGATCCAGGTATTGGTAAATCCACGTTACTACTACA
AATTTGTGCCTCACTCTCACAATCTAAAAATGTTCTATATATCACAGGTGAGGAATCAATCAATCAAACAAAATTACGTG
CAGATCGTTTGGAAGAAGACTCGAGTAAATTACAAGTATTAGCTGAAACGGATTTAGAAGTCATTTATCAAACAGTTAAA
GACGTTAATCCGGATTTACTAGTAGTTGACTCTATTCAAACAATATACCATCCAGAAATTAGCTCTGCACCAGGATCTGT
GTCACAGGTTAGAGAAAGTACGCAAAGCTTAATGAATATAGCTAAACAAATGAACATAGCTACATTTATTGTTGGGCATG
TTACAAAAGAAGGACAAATTGCAGGACCTAGATTACTTGAACACATGGTGGATACTGTATTGTATTTTGAAGGTGATGAG
CATCATGCTTATCGAATACTACGAGCAGTTAAAAACCGTTTTGGTTCGACTAATGAGATGGGAATATTTGAAATGAAACA
AAGTGGTCTAAAAGGTGTGCTAAATCCTTCAGAGATGTTTTTAGAAGAACGTTCAACTAATGTGCCAGGTTCAACAATTG
TTTCAACTATGGAAGGTACAAGACCACTACTTATTGAAGTACAGGCGCTTGTAACACCGACAACATTTAATAATCCGCGT
CGTATGGCTACCGGTATCGATCACAATCGTTTAAGCTTATTAATGGCTGTTTTAGAGAAAAAAGAAAATTATCTATTACA
ACAACAAGATGCTTATATTAAGGTTGCTGGCGGCGTGAAATTAACTGAACCTGCAGTTGATTTAAGTATCATTGTAGCTA
CAGCTTCAAGCTTTAAAGACAAAGCTGTAGACGGCTTAGACTGCTTTATTGGCGAGGTTGGTCTAACAGGAGAAGTAAGA
CGTGTAGCTAGAATAGAACAACGTGTTCAAGAAGCAGCAAAGTTAGGATTTAAGAGAGTTATTATTCCTCAAACTAATAT
AGGTGGTTGGACCTTCCCGGAAGATATAAAAGTAGTAGGTGTTTCATCAGTACATGAAGCATTAAAATACGCATTTAATT
CATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.105

100

0.674
  radA Streptococcus pneumoniae Rx1

60.177

99.559

0.599
  radA Streptococcus pneumoniae D39

60.177

99.559

0.599
  radA Streptococcus pneumoniae R6

60.177

99.559

0.599
  radA Streptococcus pneumoniae TIGR4

60.177

99.559

0.599
  radA Streptococcus mitis NCTC 12261

60.177

99.559

0.599
  radA Streptococcus mitis SK321

60.177

99.559

0.599