Detailed information
Bioinformatically predicted
Overview
| Name | comGD | Type | Machinery gene |
| Locus tag | PYH70_RS06185 | Genome accession | NZ_CP118789 |
| Coordinates | 1248610..1249002 (+) | Length | 130 a.a. |
| NCBI ID | WP_255266366.1 | Uniprot ID | - |
| Organism | Staphylococcus warneri strain 7068 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1243610..1254002
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PYH70_RS06150 (PYH70_06150) | - | 1244058..1244261 (+) | 204 | WP_002451885.1 | YqgQ family protein | - |
| PYH70_RS06155 (PYH70_06155) | - | 1244258..1245244 (+) | 987 | WP_002465775.1 | ROK family glucokinase | - |
| PYH70_RS06160 (PYH70_06160) | - | 1245244..1245567 (+) | 324 | WP_015364969.1 | MTH1187 family thiamine-binding protein | - |
| PYH70_RS06165 (PYH70_06165) | - | 1245571..1246194 (+) | 624 | WP_002465751.1 | MBL fold metallo-hydrolase | - |
| PYH70_RS06170 (PYH70_06170) | comGA | 1246241..1247215 (+) | 975 | WP_002465784.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| PYH70_RS06175 (PYH70_06175) | comGB | 1247187..1248254 (+) | 1068 | WP_002465743.1 | competence type IV pilus assembly protein ComGB | - |
| PYH70_RS06180 (PYH70_06180) | comGC | 1248267..1248584 (+) | 318 | WP_002465742.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| PYH70_RS06185 (PYH70_06185) | comGD | 1248610..1249002 (+) | 393 | WP_255266366.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| PYH70_RS06190 (PYH70_06190) | - | 1249049..1249282 (+) | 234 | WP_180706706.1 | hypothetical protein | - |
| PYH70_RS06195 (PYH70_06195) | - | 1249516..1250034 (+) | 519 | WP_037539765.1 | shikimate kinase | - |
| PYH70_RS06200 (PYH70_06200) | gcvT | 1250206..1251297 (+) | 1092 | WP_002465750.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| PYH70_RS06205 (PYH70_06205) | gcvPA | 1251316..1252665 (+) | 1350 | WP_015364973.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 130 a.a. Molecular weight: 15059.95 Da Isoelectric Point: 10.5984
>NTDB_id=795292 PYH70_RS06185 WP_255266366.1 1248610..1249002(+) (comGD) [Staphylococcus warneri strain 7068]
MVLFILSILLLCTLSSKNLLTLSMSNDEMNINLLITQLNYIKSKAISEKQSITLMFNHQSSHINVKEEHGKKYQIKIKDG
KIIKITKINLITFDKNGNVNHFGSLNIKMKHSIYKVIFHIEKGRIRYTKL
MVLFILSILLLCTLSSKNLLTLSMSNDEMNINLLITQLNYIKSKAISEKQSITLMFNHQSSHINVKEEHGKKYQIKIKDG
KIIKITKINLITFDKNGNVNHFGSLNIKMKHSIYKVIFHIEKGRIRYTKL
Nucleotide
Download Length: 393 bp
>NTDB_id=795292 PYH70_RS06185 WP_255266366.1 1248610..1249002(+) (comGD) [Staphylococcus warneri strain 7068]
ATGGTATTATTCATTTTGTCTATACTATTGTTGTGTACTTTAAGCAGTAAAAATCTTTTAACATTATCAATGTCTAATGA
TGAAATGAATATTAATCTACTAATAACTCAATTGAATTATATAAAATCAAAAGCAATTAGCGAAAAACAATCAATCACTT
TAATGTTTAATCATCAATCTTCTCATATAAATGTTAAAGAAGAACATGGTAAAAAGTATCAAATAAAAATAAAAGATGGG
AAGATCATAAAGATAACGAAAATAAATCTAATTACCTTTGATAAAAATGGCAATGTTAATCATTTTGGTTCGTTAAATAT
AAAAATGAAACATTCAATATACAAAGTCATATTTCATATTGAGAAAGGACGAATAAGGTATACCAAACTATAA
ATGGTATTATTCATTTTGTCTATACTATTGTTGTGTACTTTAAGCAGTAAAAATCTTTTAACATTATCAATGTCTAATGA
TGAAATGAATATTAATCTACTAATAACTCAATTGAATTATATAAAATCAAAAGCAATTAGCGAAAAACAATCAATCACTT
TAATGTTTAATCATCAATCTTCTCATATAAATGTTAAAGAAGAACATGGTAAAAAGTATCAAATAAAAATAAAAGATGGG
AAGATCATAAAGATAACGAAAATAAATCTAATTACCTTTGATAAAAATGGCAATGTTAATCATTTTGGTTCGTTAAATAT
AAAAATGAAACATTCAATATACAAAGTCATATTTCATATTGAGAAAGGACGAATAAGGTATACCAAACTATAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGD | Staphylococcus aureus MW2 |
49.231 |
100 |
0.492 |
| comGD | Staphylococcus aureus N315 |
49.231 |
100 |
0.492 |