Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PYH63_RS10460 Genome accession   NZ_CP118788
Coordinates   2173333..2174301 (-) Length   322 a.a.
NCBI ID   WP_155260176.1    Uniprot ID   -
Organism   Staphylococcus delphini strain 7070     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2168333..2179301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH63_RS10440 (PYH63_10365) - 2169092..2170036 (+) 945 WP_155260172.1 glycerophosphodiester phosphodiesterase -
  PYH63_RS10445 (PYH63_10370) - 2170452..2171489 (-) 1038 WP_155260173.1 siderophore ABC transporter substrate-binding protein -
  PYH63_RS10450 (PYH63_10375) - 2171590..2172378 (-) 789 WP_353421280.1 ATP-binding cassette domain-containing protein -
  PYH63_RS10455 (PYH63_10380) - 2172375..2173340 (-) 966 WP_262610266.1 iron chelate uptake ABC transporter family permease subunit -
  PYH63_RS10460 (PYH63_10385) ceuB 2173333..2174301 (-) 969 WP_155260176.1 ABC transporter permease Machinery gene
  PYH63_RS10465 (PYH63_10390) - 2174926..2176170 (-) 1245 WP_096542152.1 Glu/Leu/Phe/Val dehydrogenase -
  PYH63_RS10470 (PYH63_10395) - 2176278..2177477 (-) 1200 WP_096542154.1 ornithine--oxo-acid transaminase -
  PYH63_RS10475 (PYH63_10400) pruA 2177653..2179197 (-) 1545 WP_096556682.1 L-glutamate gamma-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35315.63 Da        Isoelectric Point: 10.4474

>NTDB_id=795266 PYH63_RS10460 WP_155260176.1 2173333..2174301(-) (ceuB) [Staphylococcus delphini strain 7070]
MRSFLMRLDVLIILLVIATCFSVFIGVSEVSPIHIHHLTDEQQNILLSSRIPRTVSIIISGSSLAVCGLIMQQLTRNKFV
SPTTAGTMDWARLGVLIALIAFPEAHILLKLLFATLLSLFGTMLFMQILRRIQFKDVIFIPLVGIMLGNIVSSFSSFVAL
RTNAVQSIGNFMQGNFSIITSGRYETLYISVPLLILAFVFANQFTIAGMGKSFSVNLGLHYEKVVNIGLVIASMITALVV
VTVGMMPFLGLIVPNLVSLFRGDHLKNALPHTAVFGALFVMICDVIGRLVIFPYEMTIGLTIGVIGSFIFIVMLMKGRSR
NA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=795266 PYH63_RS10460 WP_155260176.1 2173333..2174301(-) (ceuB) [Staphylococcus delphini strain 7070]
ATGAGAAGTTTTTTGATGCGTTTAGATGTTTTAATCATATTGTTAGTCATTGCAACGTGCTTCTCTGTGTTTATAGGTGT
ATCAGAAGTAAGTCCCATACATATACATCATTTAACTGATGAGCAACAAAATATCTTATTGTCCAGTAGAATTCCGAGAA
CGGTCAGCATTATTATTTCAGGGAGTTCGTTAGCTGTTTGTGGATTGATAATGCAACAATTAACAAGAAATAAATTTGTT
TCTCCAACAACTGCGGGAACGATGGATTGGGCGAGACTAGGGGTGTTGATTGCGCTTATCGCTTTTCCGGAAGCCCACAT
ACTCCTAAAGCTATTGTTTGCTACGTTATTAAGTTTGTTTGGAACGATGCTGTTCATGCAAATACTGCGAAGAATTCAGT
TCAAAGATGTGATTTTTATACCGTTAGTGGGGATTATGCTTGGAAACATTGTCTCGAGTTTTTCTTCTTTTGTTGCGTTA
CGTACGAATGCGGTACAAAGCATTGGTAATTTTATGCAAGGCAATTTTTCAATTATCACAAGTGGTAGGTATGAAACGTT
GTATATAAGTGTCCCTTTACTGATTTTAGCATTTGTATTTGCAAATCAATTTACAATTGCGGGTATGGGGAAATCCTTTA
GCGTCAATTTAGGGCTTCACTACGAAAAAGTGGTCAATATCGGTCTGGTTATTGCCTCTATGATCACAGCACTTGTTGTT
GTGACAGTGGGCATGATGCCGTTCTTAGGTTTGATTGTTCCTAATTTAGTTTCGCTTTTTAGAGGGGATCATCTCAAAAA
TGCATTGCCCCACACCGCAGTATTCGGCGCATTATTTGTCATGATTTGTGATGTCATAGGACGGTTAGTGATTTTCCCTT
ATGAAATGACAATTGGTTTAACCATTGGTGTCATCGGAAGTTTTATTTTTATAGTAATGCTGATGAAAGGACGTTCAAGA
AATGCTTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.206

97.826

0.481