Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   PYH63_RS06975 Genome accession   NZ_CP118788
Coordinates   1409385..1411784 (+) Length   799 a.a.
NCBI ID   WP_262631318.1    Uniprot ID   -
Organism   Staphylococcus delphini strain 7070     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1404385..1416784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH63_RS06945 (PYH63_06900) - 1404557..1404742 (+) 186 WP_096541591.1 CsbD family protein -
  PYH63_RS06950 (PYH63_06905) - 1404779..1404940 (+) 162 WP_164715577.1 hypothetical protein -
  PYH63_RS06955 (PYH63_06910) - 1405208..1406221 (-) 1014 WP_353421082.1 LLM class flavin-dependent oxidoreductase -
  PYH63_RS06960 (PYH63_06915) - 1406435..1407580 (+) 1146 WP_196232006.1 cysteine desulfurase family protein -
  PYH63_RS06965 (PYH63_06920) mnmA 1407580..1408692 (+) 1113 WP_014613739.1 tRNA 2-thiouridine(34) synthase MnmA -
  PYH63_RS06970 (PYH63_06925) - 1408708..1409382 (+) 675 WP_096541587.1 tetratricopeptide repeat protein -
  PYH63_RS06975 (PYH63_06930) recD2 1409385..1411784 (+) 2400 WP_262631318.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PYH63_RS06980 (PYH63_06935) alaS 1412030..1414663 (+) 2634 WP_353421083.1 alanine--tRNA ligase -
  PYH63_RS06985 (PYH63_06940) - 1414723..1414995 (+) 273 WP_096597089.1 IreB family regulatory phosphoprotein -
  PYH63_RS06990 (PYH63_06945) ruvX 1414988..1415415 (+) 428 Protein_1343 Holliday junction resolvase RuvX -
  PYH63_RS06995 (PYH63_06950) - 1415429..1415761 (+) 333 WP_019165167.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 799 a.a.        Molecular weight: 90430.80 Da        Isoelectric Point: 4.6011

>NTDB_id=795255 PYH63_RS06975 WP_262631318.1 1409385..1411784(+) (recD2) [Staphylococcus delphini strain 7070]
MENPTLFDHTFIKGTVEMILFHNADNHYTVLKVEIEETNGDFDDMATVVGYFPNMVEDETYTFKGQVVQHARYGQQLKAE
TFQKEIPHTKDAVIAYLSSELFKGIGKKTAESIVNKLGENAIHDILKDESVIERVPKLSKAKQQQIVEQIYANQESEQVM
IRLNELGFGSKLAMDIYKFYKSDTLTVLDQNPYQLVYDIKGVGFNKADQLAQQLGIHPEHPDRLKAGLLYLVEETCIKQG
HTYLPQEALINETIQLLSQAKASSIDYDTMTQILAELVEEKRLVNQDEMVAIPSLYYSEIKSTQNLYKIFANREHLTTFD
ASDIQLHIGEIEEVNEVHYAPSQKEALEYAIRHKVMLLTGGPGTGKTTVIKGIVQLYAEIHGISLDYDDYSDEDDYPVVL
AAPTGRASKRLHEATGLEAMTIHRLIGWNQDTKPQDKLDNEIHAKLIIIDEMSMVDTWLFHQFMDVVPIDAQVVLVGDED
QLPSVGPGQVFKDLIDANVLPRINLTEVYRQQDGSSIIDLAHRMKLGEKVDITQRFHDRSFIPCQTDQIPQVVEKVVNNA
VQKGYTMADIQVLAPMYRGNAGIKKLNQILQDILNPLSDESQREIEFGDVLFRKGDKVLQLINRPNDNVFNGDIGVIVGI
FWAKENALNKDVVVVDYDGNEITYLRSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYFRMLQKPILYTGLTRAKQSLV
FLGDADAFNIGLATAGQTRLTQLQTFLTQYFNPEDSEDEVDTDTDSAAFILTEATMFKIHPMINMGEVTPYDFLEIDKV

Nucleotide


Download         Length: 2400 bp        

>NTDB_id=795255 PYH63_RS06975 WP_262631318.1 1409385..1411784(+) (recD2) [Staphylococcus delphini strain 7070]
ATGGAAAATCCAACACTGTTTGACCATACATTTATTAAAGGCACCGTAGAAATGATTTTGTTTCATAATGCGGACAACCA
TTATACAGTGCTTAAAGTGGAAATTGAAGAAACAAATGGCGACTTTGATGATATGGCAACAGTGGTTGGATACTTTCCGA
ATATGGTAGAAGATGAGACGTACACTTTTAAAGGTCAAGTCGTGCAACATGCAAGATATGGTCAGCAATTAAAAGCAGAG
ACGTTTCAAAAAGAAATTCCTCATACCAAAGATGCCGTTATTGCGTATTTATCTAGTGAATTGTTTAAAGGGATTGGTAA
AAAAACGGCAGAATCCATTGTCAATAAGTTAGGTGAAAATGCGATTCATGACATTTTGAAAGACGAATCTGTCATTGAAC
GGGTGCCTAAACTGTCTAAAGCGAAACAACAACAAATTGTCGAGCAGATTTATGCCAACCAAGAAAGTGAACAAGTGATG
ATTCGATTGAACGAACTGGGTTTTGGTTCAAAGCTTGCGATGGACATTTACAAGTTTTATAAAAGTGATACGCTAACGGT
ACTCGACCAAAATCCGTATCAACTTGTTTATGACATTAAAGGGGTTGGTTTTAACAAAGCTGACCAACTGGCCCAACAGC
TCGGTATTCATCCTGAGCATCCCGATCGTTTGAAAGCCGGATTACTTTATTTAGTTGAAGAGACGTGTATTAAACAAGGT
CATACGTACCTCCCACAAGAAGCGTTAATCAATGAAACGATTCAACTGCTGTCTCAAGCCAAAGCATCAAGTATCGACTA
TGACACCATGACGCAAATTTTGGCTGAATTAGTTGAAGAAAAGCGTCTAGTCAATCAAGATGAAATGGTGGCCATCCCAA
GTCTTTATTATTCGGAAATTAAAAGCACACAAAATTTATATAAAATATTTGCCAATCGCGAACATTTAACAACATTTGAT
GCGTCTGATATCCAATTACATATTGGGGAAATTGAAGAGGTCAATGAAGTGCATTATGCCCCTTCTCAAAAAGAGGCTTT
AGAATATGCTATCCGACATAAAGTTATGCTCCTCACGGGTGGACCAGGTACAGGAAAGACAACTGTCATTAAAGGGATTG
TCCAGTTATACGCAGAAATTCATGGCATCTCATTAGATTACGATGACTATTCAGATGAAGATGATTATCCGGTTGTATTA
GCTGCACCAACCGGAAGAGCGTCTAAACGTTTACATGAAGCAACAGGGTTAGAAGCAATGACGATTCACCGCTTAATAGG
GTGGAATCAAGATACGAAACCACAAGACAAGTTAGACAATGAAATTCATGCGAAATTGATTATTATTGATGAGATGTCTA
TGGTGGACACTTGGCTATTCCATCAATTTATGGATGTAGTGCCTATCGATGCACAAGTCGTATTAGTCGGTGATGAAGAC
CAGCTCCCATCAGTTGGGCCCGGACAAGTTTTTAAAGATCTCATTGACGCGAATGTATTACCGCGCATTAATTTAACTGA
AGTTTATCGCCAACAGGACGGCTCCAGTATTATTGATTTAGCGCATCGCATGAAACTCGGTGAAAAAGTCGACATTACCC
AACGTTTTCACGATCGTTCGTTTATTCCATGTCAAACCGATCAAATTCCACAAGTTGTAGAAAAAGTGGTCAACAATGCT
GTGCAAAAAGGCTATACGATGGCAGATATTCAAGTGCTCGCACCGATGTATCGTGGTAATGCAGGGATTAAAAAGCTTAA
CCAAATTTTACAAGACATTTTGAATCCATTGTCAGACGAATCGCAACGTGAGATTGAATTTGGTGATGTCCTATTTCGTA
AAGGCGACAAAGTATTGCAACTGATTAATCGTCCGAACGACAATGTGTTTAATGGCGATATTGGTGTCATTGTCGGAATT
TTTTGGGCAAAGGAAAATGCTTTAAATAAAGATGTCGTGGTCGTCGATTATGATGGGAATGAGATTACTTATTTACGCTC
TGATTTGACGGAATTGACCCATGCCTATTGTACTTCGATTCATAAAGCACAAGGTTCAGAGTTTCCGATCGTTATTATGC
CCATTGTTAAGCAATATTTTAGAATGTTGCAAAAGCCGATTTTATATACTGGATTAACGCGTGCCAAACAATCGCTCGTT
TTTCTAGGTGATGCGGATGCTTTTAATATCGGATTAGCGACTGCAGGTCAAACGCGGTTAACGCAATTACAAACGTTCTT
AACGCAATATTTTAATCCGGAAGATAGTGAGGATGAAGTAGATACTGATACGGATTCTGCTGCGTTTATTTTAACTGAAG
CGACTATGTTTAAAATTCACCCGATGATTAATATGGGTGAAGTCACACCGTATGACTTTTTAGAAATTGACAAAGTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-546)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-721)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-656)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.937

99.75

0.498