Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   PYH63_RS04660 Genome accession   NZ_CP118788
Coordinates   988665..989381 (-) Length   238 a.a.
NCBI ID   WP_019166403.1    Uniprot ID   -
Organism   Staphylococcus delphini strain 7070     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 983665..994381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH63_RS04640 (PYH63_04605) - 983851..984936 (-) 1086 WP_353421762.1 YeeE/YedE family protein -
  PYH63_RS04645 (PYH63_04610) - 985170..986117 (+) 948 WP_262611939.1 LacI family DNA-binding transcriptional regulator -
  PYH63_RS04650 (PYH63_04615) - 986173..987660 (+) 1488 WP_262611940.1 sucrose-6-phosphate hydrolase -
  PYH63_RS04655 (PYH63_04620) - 987661..988605 (+) 945 WP_262611941.1 carbohydrate kinase -
  PYH63_RS04660 (PYH63_04625) agrA 988665..989381 (-) 717 WP_019166403.1 quorum-sensing response regulator AgrA Regulator
  PYH63_RS04665 (PYH63_04630) agrC 989395..990687 (-) 1293 WP_353421763.1 quorum-sensing sensor histidine kinase AgrC -
  PYH63_RS04670 (PYH63_04635) agrD 990710..990847 (-) 138 WP_262611943.1 cyclic lactone autoinducer peptide AgrD -
  PYH63_RS04675 (PYH63_04640) - 990849..991415 (-) 567 WP_155259516.1 accessory gene regulator AgrB -
  PYH63_RS04680 - 991807..991887 (+) 81 WP_110161296.1 delta-lysin family phenol-soluble modulin -
  PYH63_RS04685 (PYH63_04645) - 992177..992980 (-) 804 WP_262611944.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28072.20 Da        Isoelectric Point: 5.2431

>NTDB_id=795246 PYH63_RS04660 WP_019166403.1 988665..989381(-) (agrA) [Staphylococcus delphini strain 7070]
MKILICEDDPKQRERMVSIIENYIMIEEKPMEIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITRVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=795246 PYH63_RS04660 WP_019166403.1 988665..989381(-) (agrA) [Staphylococcus delphini strain 7070]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGCGAACGCATGGTGTCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGGAAATTGAGCTTGCTACCAATGACCCTTACGCTATTTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAACACGATCCT
GTCGGGAATATTATTTTTGTGACGAGTCATAGTGAACTGACGTACTTGACGTTTGTCTATAAAGTGGCTGCTATGGATTT
TATTTTCAAAGATGATCCTGAAGAATTAAGAACACGTATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGGACGAGCTCGGTTTACGTGAACTATGATGACGTGATG
TTTTTCGAGTCCTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAGTTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGACCGGTTCTTCAGATGTCACAACAGTTATGTGCTGAATAGAAGGAATATAACGCGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTCTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

83.193

100

0.832