Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PYH71_RS12205 Genome accession   NZ_CP118786
Coordinates   2496720..2498090 (-) Length   456 a.a.
NCBI ID   WP_096555020.1    Uniprot ID   A0AAQ0S052
Organism   Staphylococcus delphini strain 7071     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2491720..2503090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH71_RS12180 (PYH71_12160) cysE 2491886..2492551 (-) 666 WP_155262047.1 serine O-acetyltransferase -
  PYH71_RS12185 (PYH71_12165) gltX 2492938..2494392 (-) 1455 WP_353418347.1 glutamate--tRNA ligase -
  PYH71_RS12190 (PYH71_12170) ispF 2494469..2494948 (-) 480 WP_096540454.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  PYH71_RS12195 (PYH71_12175) ispD 2494941..2495639 (-) 699 WP_096555022.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  PYH71_RS12200 (PYH71_12180) - 2495640..2496701 (-) 1062 WP_019166688.1 PIN/TRAM domain-containing protein -
  PYH71_RS12205 (PYH71_12185) radA 2496720..2498090 (-) 1371 WP_096555020.1 DNA repair protein RadA Machinery gene
  PYH71_RS12210 (PYH71_12190) - 2498360..2500819 (-) 2460 WP_019166690.1 ATP-dependent Clp protease ATP-binding subunit -
  PYH71_RS12215 (PYH71_12195) - 2500835..2501839 (-) 1005 WP_096555018.1 protein arginine kinase -
  PYH71_RS12220 (PYH71_12200) - 2501829..2502359 (-) 531 WP_014614778.1 UvrB/UvrC motif-containing protein -
  PYH71_RS12225 (PYH71_12205) - 2502374..2502835 (-) 462 WP_014614779.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49958.45 Da        Isoelectric Point: 7.2142

>NTDB_id=795236 PYH71_RS12205 WP_096555020.1 2496720..2498090(-) (radA) [Staphylococcus delphini strain 7071]
MAKTKTIFECTACGYQSPKWMGKCPNCGAWNSMEESFEQKTASPKHGVRAQKTSSAKIQKLNDIKQELAPRIQTNSGELN
RVLGGGIVEGSLVLIGGDPGIGKSTLLLQMCAALSKEKRVLYITGEESLNQTKIRADRLDEDASQLNVFAETDLMVIHEA
VKKVEPDLIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNVATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKSVLNPSEMFLEERTTNVAGSTIVATMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLSEPAVDLGIVIATASSFKDQAVDGLDCYIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRVIIPKNNIGGWQFPEGIEVIGVTSVNEALKHALKN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=795236 PYH71_RS12205 WP_096555020.1 2496720..2498090(-) (radA) [Staphylococcus delphini strain 7071]
GTGGCAAAAACGAAAACGATTTTTGAATGTACGGCCTGTGGTTACCAATCACCTAAATGGATGGGTAAATGTCCAAATTG
TGGTGCTTGGAATTCAATGGAGGAATCTTTTGAACAAAAAACTGCGAGTCCTAAACACGGTGTAAGGGCGCAAAAGACAA
GTTCGGCTAAAATACAAAAGCTCAATGACATTAAACAAGAGCTTGCGCCACGTATCCAAACGAATAGTGGTGAATTAAAC
CGTGTGCTCGGTGGCGGTATTGTAGAAGGGTCACTCGTGCTGATTGGTGGCGATCCAGGGATAGGGAAGTCGACACTGTT
GCTGCAAATGTGTGCGGCGTTGTCTAAAGAAAAAAGAGTACTCTATATTACTGGTGAGGAATCACTCAATCAAACTAAAA
TTAGAGCGGATCGTTTAGATGAAGATGCGAGTCAACTGAACGTATTTGCGGAAACGGACTTAATGGTCATTCATGAAGCG
GTGAAAAAGGTCGAGCCTGATTTGATCGTCGTGGACTCGATTCAAACGATTTATCATCCTGAAATTAGTTCGGCGCCGGG
CTCTGTGTCGCAAGTTCGTGAAAGTACGCAAAGCTTGATGCATATCGCAAAGCAGATGAATGTTGCGACGTTTATTGTAG
GCCATGTGACGAAAGAAGGCCAAATTGCGGGGCCACGTTTGTTGGAACATATGGTGGATACGGTGCTTTATTTTGAAGGT
GATGAACATCACGCGTATCGTATTTTAAGAGCAGTGAAAAACCGTTTTGGCTCTACGAATGAAATGGGCATTTTTGAAAT
GAAGCAGTCCGGTTTAAAAAGTGTGCTCAATCCGTCAGAAATGTTTTTAGAAGAACGGACGACCAACGTTGCAGGTTCGA
CAATTGTTGCAACGATGGAAGGGACACGACCATTATTGATTGAAGTACAAGCGCTTGTGACACCGACAACGTTCAATAAC
CCGAGACGTATGGCGACAGGTATTGACCATAATCGCCTCAGTTTGTTGATGGCGGTGTTAGAGAAAAAAGAAGGGTATTT
ACTACAACAACAAGATGCTTACATTAAAGTAGCAGGGGGCGTCAAACTTTCTGAACCTGCTGTCGACTTAGGTATCGTCA
TTGCGACAGCTTCTAGTTTTAAAGACCAAGCAGTAGACGGCCTCGATTGTTATATTGGCGAGGTTGGATTGACAGGTGAG
GTGCGCCGTGTTTCACGTATTGAGCAACGTGTGCAAGAAGCGGCAAAACTGGGCTTTAAACGCGTAATCATCCCTAAAAA
CAATATTGGCGGATGGCAGTTCCCAGAAGGTATTGAAGTGATTGGCGTGACTTCTGTCAATGAAGCATTGAAACACGCAT
TAAAAAATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)

AAA domain (AAA_25)

(71-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.789

100

0.658
  radA Streptococcus pneumoniae Rx1

58.242

99.781

0.581
  radA Streptococcus pneumoniae D39

58.242

99.781

0.581
  radA Streptococcus pneumoniae R6

58.242

99.781

0.581
  radA Streptococcus pneumoniae TIGR4

58.242

99.781

0.581
  radA Streptococcus mitis NCTC 12261

58.242

99.781

0.581
  radA Streptococcus mitis SK321

58.242

99.781

0.581