Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   Q8X47_RS04000 Genome accession   NZ_CP132061
Coordinates   840565..841041 (-) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli strain QML220614     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 835565..846041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8X47_RS03965 kpsS 837165..838385 (+) 1221 WP_000794251.1 capsule biosynthesis protein Regulator
  Q8X47_RS03970 - 838411..838641 (-) 231 Protein_784 hypothetical protein -
  Q8X47_RS03975 - 838747..838923 (-) 177 WP_000839288.1 DUF957 domain-containing protein -
  Q8X47_RS03980 - 838940..839370 (-) 431 Protein_786 DUF5983 family protein -
  Q8X47_RS03985 cbtA 839367..839744 (-) 378 WP_086977246.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  Q8X47_RS03990 cbeA 839833..840201 (-) 369 WP_001285590.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  Q8X47_RS03995 yeeT 840275..840496 (-) 222 WP_000692300.1 DUF987 domain-containing protein -
  Q8X47_RS04000 radC 840565..841041 (-) 477 WP_001186725.1 DNA repair protein RadC Machinery gene
  Q8X47_RS04005 - 841057..841542 (-) 486 WP_000214310.1 antirestriction protein -
  Q8X47_RS04010 - 841634..842452 (-) 819 WP_001234593.1 DUF932 domain-containing protein -
  Q8X47_RS04015 - 842570..842767 (-) 198 Protein_793 DUF905 family protein -
  Q8X47_RS04020 - 842842..843297 (-) 456 WP_000581502.1 IrmA family protein -
  Q8X47_RS04025 - 843373..845888 (-) 2516 Protein_795 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=795226 Q8X47_RS04000 WP_001186725.1 840565..841041(-) (radC) [Escherichia coli strain QML220614]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=795226 Q8X47_RS04000 WP_001186725.1 840565..841041(-) (radC) [Escherichia coli strain QML220614]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTACTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCCGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TTGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGTCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399