Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   Q8X47_RS02050 Genome accession   NZ_CP132061
Coordinates   455227..455904 (-) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli strain QML220614     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 450227..460904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8X47_RS02035 chiA 451594..454287 (+) 2694 WP_000773143.1 bifunctional chitinase/lysozyme -
  Q8X47_RS02040 bfd 454456..454650 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  Q8X47_RS02045 bfr 454722..455198 (+) 477 WP_000675504.1 bacterioferritin -
  Q8X47_RS02050 pilD 455227..455904 (-) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  Q8X47_RS02055 - 456011..457173 (+) 1163 WP_085947771.1 IS3-like element IS3 family transposase -
  Q8X47_RS02060 gspM 457201..457626 (-) 426 WP_086977277.1 type II secretion system protein GspM -
  Q8X47_RS02065 gspL 457623..458786 (-) 1164 WP_001115228.1 type II secretion system protein GspL -
  Q8X47_RS02070 gspK 458801..459784 (-) 984 WP_001058521.1 type II secretion system minor pseudopilin GspK -
  Q8X47_RS02075 gspJ 459777..460364 (-) 588 WP_000610634.1 type II secretion system minor pseudopilin GspJ -
  Q8X47_RS02080 gspI 460357..460734 (-) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=795216 Q8X47_RS02050 WP_000178161.1 455227..455904(-) (pilD) [Escherichia coli strain QML220614]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=795216 Q8X47_RS02050 WP_000178161.1 455227..455904(-) (pilD) [Escherichia coli strain QML220614]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378